LICENSE
README.md
pyproject.toml
src/dna_segmentation_benchmark/__init__.py
src/dna_segmentation_benchmark/cli.py
src/dna_segmentation_benchmark/io_utils.py
src/dna_segmentation_benchmark/label_definition.py
src/dna_segmentation_benchmark/pipeline.py
src/dna_segmentation_benchmark/transcript_mapping.py
src/dna_segmentation_benchmark/wandb_logger.py
src/dna_segmentation_benchmark.egg-info/PKG-INFO
src/dna_segmentation_benchmark.egg-info/SOURCES.txt
src/dna_segmentation_benchmark.egg-info/dependency_links.txt
src/dna_segmentation_benchmark.egg-info/entry_points.txt
src/dna_segmentation_benchmark.egg-info/requires.txt
src/dna_segmentation_benchmark.egg-info/top_level.txt
src/dna_segmentation_benchmark/datasets/__init__.py
src/dna_segmentation_benchmark/eval/__init__.py
src/dna_segmentation_benchmark/eval/boundary_precision.py
src/dna_segmentation_benchmark/eval/chain_comparison.py
src/dna_segmentation_benchmark/eval/evaluate_predictors.py
src/dna_segmentation_benchmark/eval/frame_shift.py
src/dna_segmentation_benchmark/eval/global_metrics.py
src/dna_segmentation_benchmark/eval/intersection_over_union.py
src/dna_segmentation_benchmark/eval/state_transitions.py
src/dna_segmentation_benchmark/eval/structural_summary.py
src/dna_segmentation_benchmark/eval/structure.py
src/dna_segmentation_benchmark/eval/transcript_classification.py
src/dna_segmentation_benchmark/eval/utils.py
src/dna_segmentation_benchmark/icons/exon_deletion.png
src/dna_segmentation_benchmark/icons/exon_insertion.png
src/dna_segmentation_benchmark/icons/full_coverage.png
src/dna_segmentation_benchmark/icons/internal.png
src/dna_segmentation_benchmark/icons/iou.png
src/dna_segmentation_benchmark/icons/joined_exons.png
src/dna_segmentation_benchmark/icons/left_deletion.png
src/dna_segmentation_benchmark/icons/left_extension.png
src/dna_segmentation_benchmark/icons/overlap.png
src/dna_segmentation_benchmark/icons/prefect_hit.png
src/dna_segmentation_benchmark/icons/right_deletion.png
src/dna_segmentation_benchmark/icons/right_extension.png
src/dna_segmentation_benchmark/icons/split_exons.png
src/dna_segmentation_benchmark/plotting/__init__.py
src/dna_segmentation_benchmark/plotting/config.py
src/dna_segmentation_benchmark/plotting/single_pred_plotting.py
src/dna_segmentation_benchmark/plotting/summary_stat_plotting.py
src/dna_segmentation_benchmark/plotting/utils.py
src/dna_segmentation_benchmark/plotting/metrics/__init__.py
src/dna_segmentation_benchmark/plotting/metrics/boundary.py
src/dna_segmentation_benchmark/plotting/metrics/diagnostic.py
src/dna_segmentation_benchmark/plotting/metrics/frameshift.py
src/dna_segmentation_benchmark/plotting/metrics/indel.py
src/dna_segmentation_benchmark/plotting/metrics/iou.py
src/dna_segmentation_benchmark/plotting/metrics/ml.py
src/dna_segmentation_benchmark/plotting/metrics/structural.py
src/dna_segmentation_benchmark/plotting/metrics/transitions.py
tests/test_benchmark.py
tests/test_chain_metrics.py
tests/test_io_utils.py
tests/test_plot_metadata.py
tests/test_state_transitions.py
tests/test_transcript_mapping.py
tests/test_wandb_logger.py