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                                  ---  PhyML 3.3.20260528  ---                                             
                            https://github.com/stephaneguindon/phyml/                      
                             Copyright CNRS - Universite Montpellier                                 
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. Sequence filename: 			pm_aa_e.phy
. Data set: 				#1
. Initial tree: 			BioNJ
. Model of amino acids substitution: 	LG
. Integrated length (IL) model: 	no
. Number of taxa: 			30
. Log-likelihood: 			-6107.12712
. Unconstrained log-likelihood: 	-3167.23845
. Composite log-likelihood: 		-50595.77836
. Parsimony: 				769
. Tree size: 				2.14118
. Discrete gamma model: 		Yes
  - Number of classes: 			4
  - Gamma shape parameter: 		0.286
  - Relative rate in class 1: 		0.00420 [freq=0.250000] 		
  - Relative rate in class 2: 		0.09334 [freq=0.250000] 		
  - Relative rate in class 3: 		0.57079 [freq=0.250000] 		
  - Relative rate in class 4: 		3.33166 [freq=0.250000] 		
. Amino-acid frequencies
- f(Ala)= 0.098525 f(Arg)= 0.052411 f(Asn)= 0.041608
- f(Asp)= 0.060436 f(Cys)= 0.007346 f(Gln)= 0.039076
- f(Glu)= 0.080993 f(Gly)= 0.047842 f(His)= 0.015063
- f(Ile)= 0.081178 f(Leu)= 0.113155 f(Lys)= 0.060065
- f(Met)= 0.020927 f(Phe)= 0.017285 f(Pro)= 0.040682
- f(Ser)= 0.036854 f(Thr)= 0.070251 f(Trp)= 0.008149
- f(Tyr)= 0.028644 f(Val)= 0.079511

. Run ID:				none
. Random seed:				1790992915
. Subtree patterns aliasing:		no
. Version:				3.3.20260528
. Time used:				0h1m5s (65 seconds)

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 Suggested citations:
 S. Guindon, JF. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, O. Gascuel
 "New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0."
 Systematic Biology. 2010. 59(3):307-321.

 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
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