rule fastqc_preprocessing:
	input:
		"01_raw_data/{sample}.fastq.gz"
	output:
		"02_fastqc_analysis/{sample}_fastqc.html",
		"02_fastqc_analysis/{sample}_fastqc.zip"
	log:
		"00_logs/{sample}_fastqc_precheck.log"
	resources:
		mem_mb = 1024 * 16, # Last number is memory in GB
		time = 60 * 24 * 1, # Last number is days
		#account = "publicgrp", # Placeholder for SLURM submission
		#partition = "high", # Placeholder for SLURM submission
	shell:
		"fastqc '{input}' --outdir 02_fastqc_analysis/ 2> '{log}'"
