LICENSE
README.md
pyproject.toml
moml/__init__.py
moml/core/__init__.py
moml/core/hierarchical_graph_coarsener.py
moml/core/molecular_feature_extraction.py
moml/core/molecular_graph_processor.py
moml/data/__init__.py
moml/data/data_loader.py
moml/data/dataset.py
moml/data/dataset_loader.py
moml/data/dataset_splitter.py
moml/data/datasets.py
moml/data/feature_transforms.py
moml/data/molecule_processors.py
moml/data/pfas_sdf_dataset.py
moml/data/pytorch_data_loader.py
moml/data/spice_dataset.py
moml/data/processors/process_chemical_data.py
moml/models/__init__.py
moml/models/mgnn/__init__.py
moml/models/mgnn/djmgnn.py
moml/models/mgnn/hmgnn.py
moml/models/mgnn/evaluation/__init__.py
moml/models/mgnn/evaluation/metrics.py
moml/models/mgnn/evaluation/predictor.py
moml/models/mgnn/training/__init__.py
moml/models/mgnn/training/callbacks.py
moml/models/mgnn/training/trainer.py
moml/pipeline/__init__.py
moml/pipeline/pipeline_orchestrator.py
moml/simulation/__init__.py
moml/simulation/molecular_dynamics/__init__.py
moml/simulation/molecular_dynamics/ensemble.py
moml/simulation/molecular_dynamics/equilibration.py
moml/simulation/molecular_dynamics/monitors.py
moml/simulation/molecular_dynamics/runner.py
moml/simulation/molecular_dynamics/builder/system_builder.py
moml/simulation/molecular_dynamics/config/__init__.py
moml/simulation/molecular_dynamics/config/schema.py
moml/simulation/molecular_dynamics/force_field/mapper.py
moml/simulation/molecular_dynamics/force_field/registry.py
moml/simulation/molecular_dynamics/force_field/validator.py
moml/simulation/molecular_dynamics/force_field/plugins/__init__.py
moml/simulation/molecular_dynamics/force_field/plugins/gac_v1/build.py
moml/simulation/molecular_dynamics/force_field/plugins/ix_sdb_v1/build.py
moml/simulation/molecular_dynamics/force_field/plugins/nf_polyamide_v1/build.py
moml/simulation/molecular_dynamics/force_field/plugins/ro_v1/build.py
moml/simulation/qm/parser/__init__.py
moml/simulation/qm/parser/orca_parser.py
moml/utils/__init__.py
moml/utils/dataset_utils.py
moml/utils/data_utils/data_processing.py
moml/utils/data_utils/molecular.py
moml/utils/data_utils/validation.py
moml_ca.egg-info/PKG-INFO
moml_ca.egg-info/SOURCES.txt
moml_ca.egg-info/dependency_links.txt
moml_ca.egg-info/entry_points.txt
moml_ca.egg-info/requires.txt
moml_ca.egg-info/top_level.txt
tests/test_3d_structure_generation.py
tests/test_basic_imports.py
tests/test_benchmark_basic.py
tests/test_data_ingestion_and_processing.py
tests/test_data_loader.py
tests/test_dataset_loader_and_splitter.py
tests/test_datasets.py
tests/test_djmgnn.py
tests/test_djmgnn_parameter_extractor.py
tests/test_force_field_mapper.py
tests/test_force_field_validator.py
tests/test_generate_force_field_labels.py
tests/test_hierarchical_graph_coarsening.py
tests/test_hmgnn.py
tests/test_ix_sdb_builder.py
tests/test_mgnn_callbacks.py
tests/test_mgnn_metrics.py
tests/test_mgnn_predictor.py
tests/test_mgnn_trainer.py
tests/test_mmff94_api.py
tests/test_mmff94_parameter_extractor.py
tests/test_molecular_dynamics.py
tests/test_molecular_graph_generation.py
tests/test_molecular_graph_processor.py
tests/test_molecular_graph_structure.py
tests/test_nf_polyamide_builder.py
tests/test_orca_parser.py
tests/test_parameter_comparison.py
tests/test_parameter_comparison_benchmark.py
tests/test_pfas_feature_extraction.py
tests/test_pipeline_orchestrator.py
tests/test_smiles_validation_logic.py
tests/test_timing_benchmark.py