.dockerignore
.env.example
.git-blame-ignore-revs
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
.service_info_example.yaml
CITATION.cff
Dockerfile
LICENSE
Makefile
README.md
compose.yaml
pyproject.toml
.github/CODEOWNERS
.github/labels.yml
.github/ISSUE_TEMPLATE/bug-report.yaml
.github/ISSUE_TEMPLATE/feature-request.yaml
.github/workflows/labels.yml
.github/workflows/python-package.yml
.github/workflows/release.yml
.github/workflows/stale.yml
docs/Makefile
docs/source/changelog.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/features.rst
docs/source/help.rst
docs/source/index.rst
docs/source/license.rst
docs/source/_templates/module_summary.rst
docs/source/api/index.rst
docs/source/api/api/anyvar.anyvar.rst
docs/source/api/api/anyvar.extras.vcf.rst
docs/source/api/api/anyvar.queueing.celery_worker.rst
docs/source/api/api/storage/anyvar.storage.base_storage.rst
docs/source/api/api/storage/anyvar.storage.mapper_registry.rst
docs/source/api/api/storage/anyvar.storage.mappers.rst
docs/source/api/api/storage/anyvar.storage.no_db.rst
docs/source/api/api/storage/anyvar.storage.orm.rst
docs/source/api/api/storage/anyvar.storage.postgres.rst
docs/source/api/api/translate/anyvar.translate.translate.rst
docs/source/api/api/translate/anyvar.translate.vrs_python.rst
docs/source/api/api/utils/anyvar.utils.funcs.rst
docs/source/api/api/utils/anyvar.utils.liftover_utils.rst
docs/source/api/api/utils/anyvar.utils.types.rst
docs/source/configuration/async.rst
docs/source/configuration/authentication.rst
docs/source/configuration/docker_compose.rst
docs/source/configuration/dotenv_example.rst
docs/source/configuration/index.rst
docs/source/configuration/logging.rst
docs/source/configuration/service_info.rst
docs/source/configuration/snowflake.rst
docs/source/configuration/storage.rst
docs/source/getting_started/docker_compose.rst
docs/source/getting_started/index.rst
docs/source/getting_started/manual_setup.rst
docs/source/usage/index.rst
docs/source/usage/python.rst
docs/source/usage/rest_api.rst
docs/source/usage/rest_service.rst
scripts/vcf_benchmark.py
src/anyvar/__init__.py
src/anyvar/anyvar.py
src/anyvar/extras/__init__.py
src/anyvar/extras/vcf.py
src/anyvar/queueing/__init__.py
src/anyvar/queueing/celery_worker.py
src/anyvar/restapi/__init__.py
src/anyvar/restapi/auth.py
src/anyvar/restapi/main.py
src/anyvar/restapi/schema.py
src/anyvar/restapi/vcf.py
src/anyvar/storage/__init__.py
src/anyvar/storage/base_storage.py
src/anyvar/storage/mapper_registry.py
src/anyvar/storage/mappers.py
src/anyvar/storage/no_db.py
src/anyvar/storage/orm.py
src/anyvar/storage/postgres.py
src/anyvar/storage/snowflake.py
src/anyvar/translate/__init__.py
src/anyvar/translate/translate.py
src/anyvar/translate/vrs_python.py
src/anyvar/utils/__init__.py
src/anyvar/utils/funcs.py
src/anyvar/utils/liftover_utils.py
src/anyvar/utils/types.py
src/biocommons.anyvar.egg-info/PKG-INFO
src/biocommons.anyvar.egg-info/SOURCES.txt
src/biocommons.anyvar.egg-info/dependency_links.txt
src/biocommons.anyvar.egg-info/requires.txt
src/biocommons.anyvar.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/data/service_info_openapi.yaml
tests/data/variations.json
tests/integration/conftest.py
tests/integration/test_search.py
tests/integration/crud/test_annotation.py
tests/integration/crud/test_location.py
tests/integration/crud/test_mappings.py
tests/integration/crud/test_variation.py
tests/integration/vcf/test_annotate_vcf.py
tests/integration/vcf/test_ingest_vcf.py
tests/unit/__init__.py
tests/unit/test_anyvar.py
tests/unit/test_restapi.py
tests/unit/extras/__init__.py
tests/unit/extras/test_liftover.py
tests/unit/restapi/__init__.py
tests/unit/restapi/test_auth.py
tests/unit/storage/__init__.py
tests/unit/storage/conftest.py
tests/unit/storage/storage_test_funcs.py
tests/unit/storage/test_no_db.py
tests/unit/storage/test_postgres.py
tests/unit/storage/test_snowflake.py
tests/unit/storage/test_snowflake_dyntable.py