Metadata-Version: 2.4
Name: chunter
Version: 0.2.0
Summary: Cohomological analysis of circular structures in scRNA-seq data
Author-email: Smelly Maggs <maggs@mpi-cbg.de>
License-File: LICENSE
Requires-Python: >=3.10
Requires-Dist: gseapy>=1.1.8
Requires-Dist: leidenalg>=0.10.2
Requires-Dist: magic-impute>=3.0.0
Requires-Dist: nbformat>=5.10.4
Requires-Dist: numpy>=2.2.5
Requires-Dist: pandas>=2.2.3
Requires-Dist: plotly>=6.0.1
Requires-Dist: python-igraph>=0.11.8
Requires-Dist: ringity>=0.4a2
Requires-Dist: ripser>=0.6.12
Requires-Dist: scanpy>=1.11.1
Description-Content-Type: text/markdown

# Cocycle Hunter

Python package for hunting for cocycles in single-cell RNA-seq data.

## Installation

Cocycle hunter can currently be installed as a python package "chunter" from the PyPi test repository "https://test.pypi.org". To following steps might be used to setup a python environment that contains cocycle hunter:

### Using UV package manager

1. Install UV as described on the UV web page.
2. Create an empty folder "testing-cocycle-hunter"
3. In the terminal run
```
uv init
uv add --dev ipykernel
uv add chunter --index testpypi=https://test.pypi.org/simple --index-strategy unsafe-best-match
```

### Using conda + pip

```
conda create -n cocycle-hunter-env python=3.10 pip matplotlib pandas ipykernel
conda activate cocycle-hunter-env
pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ chunter==0.1.1
```
