# Python cache/bytecode
__pycache__/
*.py[cod]
*$py.class

# Build/distribution
.Python
build/
dist/
sdist/
*.egg-info/
.eggs/
pip-wheel-metadata/
MANIFEST

# Testing/coverage
.pytest_cache/
.tox/
.nox/
.coverage
.coverage.*
htmlcov/
coverage.xml
.hypothesis/

# Jupyter/IPython
.ipynb_checkpoints/
profile_default/
ipython_config.py

# Virtual environments
.env
.venv/
env/
venv/
ENV/
*.env

# Runtime/local data
.cellpose_server_data/
remote_config.json
models/
*.log
*.tmp

# Model distillation/checkpoint outputs
distill-encoder-test*/
distilled_cpsam_encoder*/
cpsam_encoder_student*.pt
student_*checkpoint*.pt
*.pt
*.npy
supervised_flow_cache/
stage1_feature/
stage2_output/
stage3_supervised/
test_evaluation_*.csv
test_evaluation_*.json

# AVI/video fluorescence analysis outputs
video_object_fluorescence*/
object_fluorescence*/
video_fluorescence*/
avi_fluorescence*/
track_overlay*/
tracking_overlay*/
tracking_analysis*/
selected_tracking_frames*/
aligned_condition_difference*/
control_subtracted_br_regions*/
trace_distribution*/
tools/analyze_video_object_fluorescence*.py
tools/render_*trace*.py
tools/render_track_overlay.py
tools/render_selected_tracking_frames.py
tools/render_aligned_condition_difference.py
tools/render_control_subtracted_br_regions.py
video_object_fluorescence_plot.ipynb

# Editor/OS
.vscode/
.idea/
.DS_Store
Thumbs.db

# Platform/local artifacts
*.o*
*.e*
x:/home/
