.flake8
.gitignore
CHANGELOG.md
CITATION.cff
LICENSE
README.md
pyproject.toml
requirements.txt
.github/workflows/iblatlas_ci.yml
.github/workflows/pypi_publish.yml
examples/Working with ibllib atlas.ipynb
examples/atlas_circular_pyramidal_flatmap.ipynb
examples/atlas_dorsal_cortex_flatmap.ipynb
examples/atlas_genomics_load_agea.ipynb
examples/atlas_genomics_load_merfish.ipynb
examples/atlas_mapping.ipynb
examples/atlas_plotting_points_on_slice.ipynb
examples/atlas_plotting_scalar_on_slice.ipynb
examples/atlas_streamlines.ipynb
examples/atlas_swanson_flatmap.ipynb
examples/atlas_working_with_ibllib_atlas.ipynb
examples/visualize_agea_volumes.py
examples/3D/meshes_convert_allen_obj_to_glb.py
examples/3D/meshes_load_and_display.py
examples/images/brain_xyz.png
iblatlas/__init__.py
iblatlas/allen_structure_tree.csv
iblatlas/atlas.py
iblatlas/beryl.npy
iblatlas/cosmos.npy
iblatlas/flatmaps.py
iblatlas/franklin_paxinos_structure_tree.csv
iblatlas/mappings.pqt
iblatlas/plots.py
iblatlas/regions.py
iblatlas/swanson_regions.npy
iblatlas.egg-info/PKG-INFO
iblatlas.egg-info/SOURCES.txt
iblatlas.egg-info/dependency_links.txt
iblatlas.egg-info/entry_points.txt
iblatlas.egg-info/requires.txt
iblatlas.egg-info/top_level.txt
iblatlas/genomics/__init__.py
iblatlas/genomics/agea.py
iblatlas/genomics/merfish.py
iblatlas/genomics/gene_expression_scrapping/01-make_experiments_parquet.py
iblatlas/genomics/gene_expression_scrapping/02-scrape-experiments.py
iblatlas/genomics/gene_expression_scrapping/03-scrape-correlations.py
iblatlas/genomics/gene_expression_scrapping/04-read-experiments.py
iblatlas/genomics/gene_expression_scrapping/05-generate-atlas-templates.py
iblatlas/genomics/gene_expression_scrapping/06-denoise-impute.py
iblatlas/genomics/merfish_scrapping/00_download_data.py
iblatlas/genomics/merfish_scrapping/01_ingest_zhuang.py
iblatlas/genomics/merfish_scrapping/02_create_volumes.py
iblatlas/gui/__init__.py
iblatlas/gui/atlas_gui.ui
iblatlas/gui/atlasview.py
iblatlas/gui/braintree.py
iblatlas/gui/requirements.txt
iblatlas/gui/sliceview.ui
iblatlas/gui/topview.ui
iblatlas/streamlines/__init__.py
iblatlas/streamlines/utils.py
iblatlas/streamlines/streamlines_scraping/prepare_depths.py
iblatlas/streamlines/streamlines_scraping/prepare_laplacian.py
iblatlas/streamlines/streamlines_scraping/prepare_streamlines.py
iblatlas/tests/__init__.py
iblatlas/tests/test_allen_atlas.py
iblatlas/tests/test_atlas.py
iblatlas/tests/test_genomics.py