anndata<0.13,>=0.11.4
dask[array]>=2024.4
imagecodecs>=2024.6.1
loguru>=0.7.3
numpy>=2.0
opencv-python>=4.9
pandas>=2.1
pydantic>=2.7.6
pyyaml>=6.0.2
scikit-image>=0.24
scipy>=1.11
shapely>=2.0
spatialdata>0.7
tifffile>=2024.7.2
zarr>3.0
fsspec>=2024.6.1
dearrayer>=0.1.0
pooch>=1.8

[all]
plex_pipe[globus,gui,jupyter,segmentation]

[all-cuda]
torch
torchvision
plex_pipe[globus,gui,jupyter,segmentation]

[globus]
globus-sdk>=3.59.0

[gui]
qtpy>=2.4.0
PySide6>=6.7
napari>=0.6.6
napari-spatialdata>0.5.7

[jupyter]
ipykernel>=6.0
ipywidgets>=8.1.8

[segmentation]
torch
torchvision
cellpose>=4.0
instanseg-torch>=0.0.9
