DAY-EC activated.
DAY-EC activated.
=== time ===
2026-05-30T15:51:02+00:00
=== fsx ===
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  7.8T  973G  90% /fsx
=== lane output sizes ===
L001 size=560G files=106 state=done
L002 size=560G files=106 state=done
L003 size=560G files=106 state=done
L004 size=562G files=106 state=done
L005 size=561G files=106 state=done
L006 size=551G files=89 state=running
L007 size=562G files=106 state=done
L008 size=560G files=106 state=done
=== recent log tails ===
--- L001 ---
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 48
bcl_num_decompression_threads: 16
bcl_cpu_heavy_threads: 192
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv --bcl-only-lane 1 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv --bcl-only-lane 1 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L001 finished: 2026-05-30T15:43:19+00:00
--- L006 ---
prepared_lane_samplesheet lane=6 settings=<unchanged> out=results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv
run_bclconvert_lane L006 started: 2026-05-30T14:33:23+00:00
host: i192mem-dy-all-9
threads: 192
TMPDIR: /dev/shm
bcl_input_directory: /fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006
sample_sheet: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv
bcl_only_lane: 6
sample_sheet_settings_json: {}
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 10000
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.4T  5.4T  39% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.4T  5.4T  39% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 48
bcl_num_decompression_threads: 16
bcl_cpu_heavy_threads: 192
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv --bcl-only-lane 6 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
INFO:    Using cached SIF image
