DAY-EC activated.
DAY-EC activated.
time=2026-05-30T16:22:12Z
squeue:
processes:
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1871708       1 S          03:23  0.0  0.0 sleep 900
1873202 1873201 S          00:04  0.0  0.0 bash -l /tmp/daylily-ssm-MsvJA1.sh
1873300 1873202 R          00:00  0.0  0.0 ps -u ubuntu -o pid,ppid,stat,etime,pcpu,pmem,cmd --sort=start_time
1873301 1873202 S          00:00  0.0  0.0 tail -80
direct status:
{
  "command": "bin/day_run produce_bclconvert_fastqs_and_metrics -p -j 20 -k --config run_context_file=config/runs.tsv bootstrap_bclconvert=true",
  "completed_at": "2026-05-30T16:18:52Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis",
  "session_name": "ccv20260530r42_bclconvert_rc0_direct",
  "started_at": "2026-05-30T16:18:38Z"
}

latest snakemake log:
WorkflowError in file /fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/workflow/rules/common.smk, line 426:
The units table was not found at /fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/config/units.tsv. Create config/units.tsv or set --config units_table=/path/to/units.tsv.
  File "/fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/workflow/Snakefile", line 66, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/workflow/rules/global_common.smk", line 151, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/workflow/rules/common.smk", line 1089, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260530r42_illumina_bclconvert/daylily-omics-analysis/workflow/rules/common.smk", line 426, in _load_units_table
