DAY-EC activated.
DAY-EC activated.
=== identity ===
2026-05-30T17:34:05Z
ip-10-0-0-88.us-west-2.compute.internal
uid=1000(ubuntu) gid=1000(ubuntu) groups=1000(ubuntu),4(adm),20(dialout),24(cdrom),25(floppy),27(sudo),29(audio),30(dip),44(video),46(plugdev),119(netdev),120(lxd)
 17:34:05 up 1 day, 14:48, 124 users,  load average: 1.71, 1.56, 0.93
=== memory ===
               total        used        free      shared  buff/cache   available
Mem:           247Gi       8.3Gi       216Gi       5.0Mi        23Gi       237Gi
Swap:             0B          0B          0B
=== filesystems ===
Filesystem              Type    Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v lustre  8.8T  3.6T  5.2T  41% /fsx
tmpfs                   tmpfs   199G     0  199G   0% /dev/shm
/dev/root               ext4    408G   42G  367G  11% /
Filesystem                Inodes   IUsed    IFree IUse% Mounted on
10.0.1.96@tcp:/d4tzvb4v 26639564 1065017 25574547    4% /fsx
tmpfs                   32469571       4 32469567    1% /dev/shm
/dev/root               54319104  639972 53679132    2% /
=== /fsx mount ===
TARGET SOURCE                  FSTYPE OPTIONS
/fsx   10.0.1.96@tcp:/d4tzvb4v lustre rw,noatime,checksum,flock,user_xattr,lruresize,lazystatfs,nouser_fid2path,verbose,encrypt
10.0.1.96@tcp:/d4tzvb4v on /fsx type lustre (rw,noatime,checksum,flock,user_xattr,lruresize,lazystatfs,nouser_fid2path,verbose,encrypt)
=== lustre df ===
UUID                       bytes        Used   Available Use% Mounted on
d4tzvb4v-MDT0000_UUID      275.0G       11.0G      263.9G   5% /fsx[MDT:0]
d4tzvb4v-OST0000_UUID        1.1T      439.2G      674.9G  40% /fsx[OST:0]
d4tzvb4v-OST0001_UUID        1.1T      449.5G      664.4G  41% /fsx[OST:1]
d4tzvb4v-OST0002_UUID        1.1T      452.2G      661.9G  41% /fsx[OST:2]
d4tzvb4v-OST0003_UUID        1.1T      451.9G      662.2G  41% /fsx[OST:3]
d4tzvb4v-OST0004_UUID        1.1T      480.9G      633.1G  44% /fsx[OST:4]
d4tzvb4v-OST0005_UUID        1.1T      445.8G      668.2G  41% /fsx[OST:5]
d4tzvb4v-OST0006_UUID        1.1T      440.3G      673.7G  40% /fsx[OST:6]
d4tzvb4v-OST0007_UUID        1.1T      462.9G      651.0G  42% /fsx[OST:7]

filesystem_summary:         8.7T        3.5T        5.2T  41% /fsx

UUID                      Inodes       IUsed       IFree IUse% Mounted on
d4tzvb4v-MDT0000_UUID    26639564     1065017    25574547   4% /fsx[MDT:0]
d4tzvb4v-OST0000_UUID     5610222       80526     5529696   2% /fsx[OST:0]
d4tzvb4v-OST0001_UUID     5525470       80205     5445265   2% /fsx[OST:1]
d4tzvb4v-OST0002_UUID     5503500       80150     5423350   2% /fsx[OST:2]
d4tzvb4v-OST0003_UUID     5505968       80205     5425763   2% /fsx[OST:3]
d4tzvb4v-OST0004_UUID     5268157       79806     5188351   2% /fsx[OST:4]
d4tzvb4v-OST0005_UUID     5556166       80266     5475900   2% /fsx[OST:5]
d4tzvb4v-OST0006_UUID     5601142       80316     5520826   2% /fsx[OST:6]
d4tzvb4v-OST0007_UUID     5415442       80098     5335344   2% /fsx[OST:7]

filesystem_summary:     26639564     1065017    25574547   4% /fsx

=== validation analysis dirs ===
112
2026-05-30T05:41:20.0000000000 ccv20260529r21_ont_run_qc_dryrun
2026-05-30T05:44:04.0000000000 ccv20260529r21_ont_run_qc
2026-05-30T05:55:46.0000000000 ccv20260529r22_illumina_bclconvert_dryrun
2026-05-30T05:55:46.0000000000 ccv20260529r22_ont_run_qc_dryrun
2026-05-30T05:58:29.0000000000 ccv20260529r22_illumina_bclconvert
2026-05-30T06:01:29.0000000000 ccv20260529r23_ont_run_qc_dryrun
2026-05-30T06:05:25.0000000000 ccv20260529r24_illumina_bclconvert_dryrun
2026-05-30T06:08:09.0000000000 ccv20260529r24_illumina_bclconvert
2026-05-30T06:21:29.0000000000 ccv20260529r25_illumina_bclconvert_dryrun
2026-05-30T06:24:12.0000000000 ccv20260529r25_illumina_bclconvert
2026-05-30T06:32:10.0000000000 ccv20260529r26_illumina_bclconvert_dryrun
2026-05-30T06:48:35.0000000000 ccv20260529r26_illumina_hg002_kitchensink_multiqc_dryrun
2026-05-30T06:50:24.0000000000 ccv20260529r26_illumina_hg002_kitchensink_multiqc
2026-05-30T07:01:58.0000000000 ccv20260529r26_complete_genomics_mgi_snv_concordance_dryrun
2026-05-30T07:17:31.0000000000 ccv20260529r27_complete_genomics_mgi_snv_concordance_dryrun
2026-05-30T07:19:49.0000000000 ccv20260529r28_complete_genomics_mgi_snv_concordance_dryrun
2026-05-30T07:28:37.0000000000 ccv20260529r29_complete_genomics_mgi_snv_concordance_dryrun
2026-05-30T07:36:18.0000000000 ccv20260529r30_illumina_snv_alignstats_relatedness_vep_multiqc_dryrun
2026-05-30T07:54:46.0000000000 ccv20260529r31_illumina_hg002_kitchensink_multiqc_dryrun
2026-05-30T08:01:49.0000000000 ccv20260529r32_illumina_hg002_kitchensink_multiqc_dryrun
2026-05-30T08:03:26.0000000000 ccv20260529r32_illumina_hg002_kitchensink_multiqc
2026-05-30T08:23:29.0000000000 ccv20260529r33_ultima_snv_alignstats_dryrun
2026-05-30T08:36:37.0000000000 ccv20260529r34_illumina_hg002_kitchensink_multiqc
2026-05-30T08:59:07.0000000000 ccv20260529r35_ont_snv_alignstats_dryrun
2026-05-30T09:18:30.0000000000 ccv20260529r36_illumina_hg002_kitchensink_multiqc_dryrun
2026-05-30T09:19:41.0000000000 ccv20260529r36_illumina_hg002_kitchensink_multiqc
2026-05-30T09:27:28.0000000000 ccv20260529r35_ont_snv_alignstats_kitchensink_dryrun
2026-05-30T09:56:41.0000000000 ccv20260529r37_illumina_bclconvert_dryrun
2026-05-30T10:00:40.0000000000 ccv20260529r38_illumina_bclconvert_dryrun
2026-05-30T10:01:44.0000000000 ccv20260529r38_illumina_bclconvert
2026-05-30T10:08:58.0000000000 ccv20260529r39_illumina_bclconvert_dryrun
2026-05-30T10:25:24.0000000000 ccv20260529r41_pacbio_snv_alignstats_dryrun
2026-05-30T10:28:07.0000000000 ccv20260529r40_illumina_hg002_kitchensink_multiqc_dryrun
2026-05-30T10:29:18.0000000000 ccv20260529r40_illumina_hg002_kitchensink_multiqc
2026-05-30T12:07:38.0000000000 ccv20260529r42_roche_snv_alignstats_dryrun
2026-05-30T12:10:33.0000000000 ccv20260529r43_ultima_snv_alignstats_kitchensink_dryrun
2026-05-30T12:17:22.0000000000 ccv20260529r45_roche_snv_alignstats_dryrun
2026-05-30T12:30:38.0000000000 ccv20260529r46_illumina_hg002_kitchensink_multiqc_dryrun
2026-05-30T12:48:09.0000000000 ccv20260529r47_hybrid_ilmn_ont_snv_kitchensink_dryrun
2026-05-30T12:48:09.0000000000 ccv20260529r47_hybrid_ultima_ont_snv_dryrun
=== validation active dirs file-count sample ===
2643 files /fsx/analysis_results/ubuntu/ccv20260529r6_ont_snv_alignstats_kitchensink
1830 files /fsx/analysis_results/ubuntu/ccv20260529r6_pacbio_snv_alignstats
=== daylily run statuses ===
--- /home/ubuntu/daylily-runs/ccv20260529r41_pacbio_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_sentmm2_align produce_na_dedup_cram produce_sentdpb_snv_vcf produce_alignstats produce_snv_concordances -p -j 2 -k -T 1 -n",
  "completed_at": "2026-05-30T10:25:52Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r41_pacbio_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r41_pacbio_snv_alignstats_dryrun",
  "started_at": "2026-05-30T10:25:24Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r42_roche_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentd_snv_vcf -p -j 5 -k -n",
  "completed_at": "2026-05-30T12:08:03Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r42_roche_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r42_roche_snv_alignstats_dryrun",
  "started_at": "2026-05-30T12:07:38Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r43_ultima_snv_alignstats_kitchensink/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentdug_snv_vcf produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k",
  "completed_at": "2026-05-30T12:45:22Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r43_ultima_snv_alignstats_kitchensink/daylily-omics-analysis",
  "session_name": "ccv20260529r43_ultima_snv_alignstats_kitchensink",
  "started_at": "2026-05-30T12:11:44Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r43_ultima_snv_alignstats_kitchensink_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentdug_snv_vcf produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k -n",
  "completed_at": "2026-05-30T12:10:59Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r43_ultima_snv_alignstats_kitchensink_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r43_ultima_snv_alignstats_kitchensink_dryrun",
  "started_at": "2026-05-30T12:10:33Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r45_roche_snv_alignstats/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentD_vcf -p -j 5 -k",
  "completed_at": "2026-05-30T12:43:49Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r45_roche_snv_alignstats/daylily-omics-analysis",
  "session_name": "ccv20260529r45_roche_snv_alignstats",
  "started_at": "2026-05-30T12:18:32Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r45_roche_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentD_vcf -p -j 5 -k -n",
  "completed_at": "2026-05-30T12:17:49Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r45_roche_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r45_roche_snv_alignstats_dryrun",
  "started_at": "2026-05-30T12:17:21Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r46_illumina_hg002_kitchensink_multiqc_dryrun/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_alignstats produce_snv_concordances produce_relatedness produce_gatk_contam_estimate produce_site_mix_contam_estimate produce_global_contam_check produce_vep produce_expansionhunter produce_htd_calls produce_metagenomics produce_multiqc_all --config 'aligners=[\"sent\"]' 'dedupers=[\"dmd\"]' 'snv_callers=[\"sentd\"]' 'htd_callers=[\"cyrius\"]' 'multiqc_qc={\"enable_tools\":[\"vep\",\"metagenomics\",\"contam_identity\"]}' -j 200 -p -k --rerun-triggers mtime -n",
  "completed_at": "2026-05-30T12:30:58Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r46_illumina_hg002_kitchensink_multiqc_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r46_illumina_hg002_kitchensink_multiqc_dryrun",
  "started_at": "2026-05-30T12:30:38Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r47_hybrid_ilmn_ont_snv_kitchensink_dryrun/status.json
{
  "command": "bin/day_run produce_snv_concordances produce_sentdhiomr_sv produce_sentdhiomr_snv_vcf produce_relatedness produce_vep produce_multiqc_all --config 'dedupers=[\"dmd\"]' 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k -n",
  "completed_at": "2026-05-30T12:48:37Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r47_hybrid_ilmn_ont_snv_kitchensink_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r47_hybrid_ilmn_ont_snv_kitchensink_dryrun",
  "started_at": "2026-05-30T12:48:09Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r47_hybrid_ultima_ont_snv_dryrun/status.json
{
  "command": "bin/day_run produce_sentdhuomr_snv_vcf produce_alignstats produce_snv_concordances -p -j 100 -k -n",
  "completed_at": "2026-05-30T12:48:34Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r47_hybrid_ultima_ont_snv_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r47_hybrid_ultima_ont_snv_dryrun",
  "started_at": "2026-05-30T12:48:09Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r4_simple-test_dryrun/status.json
{
  "command": "source dyoainit; dy-a local hg38; dy-r -p -k -j 1 help",
  "completed_at": "2026-05-29T20:10:42Z",
  "exit_code": 2,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r4_simple-test_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r4_simple-test_dryrun",
  "started_at": "2026-05-29T20:10:19Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r5_illumina_hg002_kitchensink_multiqc_dryrun/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_alignstats produce_snv_concordances produce_relatedness produce_gatk_contam_estimate produce_site_mix_contam_estimate produce_global_contam_check produce_vep produce_expansionhunter produce_htd_calls produce_metagenomics produce_multiqc_all --config 'aligners=[\"sent\"]' 'dedupers=[\"dmd\"]' 'snv_callers=[\"sentd\"]' 'htd_callers=[\"cyrius\"]' 'multiqc_qc={\"enable_tools\":[\"vep\",\"metagenomics\",\"contam_identity\"]}' -j 200 -p -k --rerun-triggers mtime -n",
  "completed_at": "2026-05-29T20:33:30Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r5_illumina_hg002_kitchensink_multiqc_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r5_illumina_hg002_kitchensink_multiqc_dryrun",
  "started_at": "2026-05-29T20:33:05Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r5_illumina_snv_alignstats_relatedness_vep_multiqc/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_alignstats produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k",
  "completed_at": "2026-05-29T21:25:58Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r5_illumina_snv_alignstats_relatedness_vep_multiqc/daylily-omics-analysis",
  "session_name": "ccv20260529r5_illumina_snv_alignstats_relatedness_vep_multiqc",
  "started_at": "2026-05-29T20:38:10Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r5_illumina_snv_alignstats_relatedness_vep_multiqc_dryrun/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_alignstats produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k -n",
  "completed_at": "2026-05-29T20:28:49Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r5_illumina_snv_alignstats_relatedness_vep_multiqc_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r5_illumina_snv_alignstats_relatedness_vep_multiqc_dryrun",
  "started_at": "2026-05-29T20:28:21Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r5_simple-test_dryrun/status.json
{
  "command": "source dyoainit; dy-a local hg38; dy-r -p -k -j 1 help",
  "completed_at": "2026-05-29T20:21:39Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r5_simple-test_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r5_simple-test_dryrun",
  "started_at": "2026-05-29T20:21:16Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r5_ultima_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentdug_snv_vcf produce_snv_concordances -p -j 20 -k -n",
  "completed_at": "2026-05-29T20:35:59Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r5_ultima_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r5_ultima_snv_alignstats_dryrun",
  "started_at": "2026-05-29T20:35:32Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ont_snv_alignstats/status.json
{
  "command": "bin/day_run produce_alignstats produce_sentdont_snv_vcf produce_snv_concordances -p -j 5 -k",
  "completed_at": "2026-05-29T21:42:30Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ont_snv_alignstats/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ont_snv_alignstats",
  "started_at": "2026-05-29T21:22:54Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ont_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_sentdont_snv_vcf produce_snv_concordances -p -j 5 -k -n",
  "completed_at": "2026-05-29T21:17:17Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ont_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ont_snv_alignstats_dryrun",
  "started_at": "2026-05-29T21:14:15Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ont_snv_alignstats_kitchensink/status.json
{
  "command": "bin/day_run produce_alignstats produce_sentdont_snv_vcf produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 5 -k",
  "completed_at": "2026-05-29T22:20:25Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ont_snv_alignstats_kitchensink/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ont_snv_alignstats_kitchensink",
  "started_at": "2026-05-29T21:38:05Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ont_snv_alignstats_kitchensink_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_sentdont_snv_vcf produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 5 -k -n",
  "completed_at": "2026-05-29T21:26:58Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ont_snv_alignstats_kitchensink_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ont_snv_alignstats_kitchensink_dryrun",
  "started_at": "2026-05-29T21:26:27Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_pacbio_snv_alignstats/status.json
{
  "command": "bin/day_run produce_sentmm2_align produce_na_dedup_cram produce_sentdpb_snv_vcf produce_alignstats produce_snv_concordances -p -j 2 -k -T 1",
  "completed_at": "2026-05-29T22:40:31Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_pacbio_snv_alignstats/daylily-omics-analysis",
  "session_name": "ccv20260529r6_pacbio_snv_alignstats",
  "started_at": "2026-05-29T21:55:22Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_pacbio_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_sentmm2_align produce_na_dedup_cram produce_sentdpb_snv_vcf produce_alignstats produce_snv_concordances -p -j 2 -k -T 1 -n",
  "completed_at": "2026-05-29T21:49:22Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_pacbio_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r6_pacbio_snv_alignstats_dryrun",
  "started_at": "2026-05-29T21:48:56Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ultima_snv_alignstats/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentdug_snv_vcf produce_snv_concordances -p -j 20 -k",
  "completed_at": "2026-05-29T21:21:13Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ultima_snv_alignstats/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ultima_snv_alignstats",
  "started_at": "2026-05-29T21:01:00Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ultima_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentdug_snv_vcf produce_snv_concordances -p -j 20 -k -n",
  "completed_at": "2026-05-29T20:55:18Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ultima_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ultima_snv_alignstats_dryrun",
  "started_at": "2026-05-29T20:54:47Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun/status.json
{
  "command": "bin/day_run produce_alignstats produce_na_dedup_cram produce_sentdug_snv_vcf produce_snv_concordances produce_relatedness produce_vep produce_multiqc_all --config 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k -n",
  "completed_at": "2026-05-29T21:04:29Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun",
  "started_at": "2026-05-29T21:04:01Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_hybrid_ilmn_ont_snv/status.json
{
  "command": "bin/day_run produce_snv_concordances produce_sentdhiomr_sv produce_sentdhiomr_snv_vcf --config 'dedupers=[\"dmd\"]' -p -j 100 -k",
  "completed_at": "2026-05-30T00:45:33Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_hybrid_ilmn_ont_snv/daylily-omics-analysis",
  "session_name": "ccv20260529r7_hybrid_ilmn_ont_snv",
  "started_at": "2026-05-29T23:40:40Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_hybrid_ilmn_ont_snv_dryrun/status.json
{
  "command": "bin/day_run produce_snv_concordances produce_sentdhiomr_sv produce_sentdhiomr_snv_vcf --config 'dedupers=[\"dmd\"]' -p -j 100 -k -n",
  "completed_at": "2026-05-29T23:38:15Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_hybrid_ilmn_ont_snv_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r7_hybrid_ilmn_ont_snv_dryrun",
  "started_at": "2026-05-29T23:37:45Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_hybrid_ilmn_ont_snv_kitchensink/status.json
{
  "command": "bin/day_run produce_snv_concordances produce_sentdhiomr_sv produce_sentdhiomr_snv_vcf produce_relatedness produce_vep produce_multiqc_all --config 'dedupers=[\"dmd\"]' 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k",
  "completed_at": "2026-05-30T00:46:58Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_hybrid_ilmn_ont_snv_kitchensink/daylily-omics-analysis",
  "session_name": "ccv20260529r7_hybrid_ilmn_ont_snv_kitchensink",
  "started_at": "2026-05-29T23:40:40Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_hybrid_ilmn_ont_snv_kitchensink_dryrun/status.json
{
  "command": "bin/day_run produce_snv_concordances produce_sentdhiomr_sv produce_sentdhiomr_snv_vcf produce_relatedness produce_vep produce_multiqc_all --config 'dedupers=[\"dmd\"]' 'multiqc_qc={\"enable_tools\":[\"vep\"]}' -p -j 100 -k -n",
  "completed_at": "2026-05-29T23:38:16Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_hybrid_ilmn_ont_snv_kitchensink_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r7_hybrid_ilmn_ont_snv_kitchensink_dryrun",
  "started_at": "2026-05-29T23:37:45Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_illumina_snv_alignstats/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_snv_concordances produce_alignstats -p -k -j 20",
  "completed_at": "2026-05-30T00:10:58Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_illumina_snv_alignstats/daylily-omics-analysis",
  "session_name": "ccv20260529r7_illumina_snv_alignstats",
  "started_at": "2026-05-29T23:38:28Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_illumina_snv_alignstats_dryrun/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_snv_concordances produce_alignstats -p -k -j 20 -n",
  "completed_at": "2026-05-29T23:35:59Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_illumina_snv_alignstats_dryrun/daylily-omics-analysis",
  "session_name": "ccv20260529r7_illumina_snv_alignstats_dryrun",
  "started_at": "2026-05-29T23:35:33Z"
}
--- /home/ubuntu/daylily-runs/ccv20260529r7_inflection-bjuice-product-v0.1_dryrun/status.json
{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentdhiomr_sv produce_snv_concordances produce_sentdhiomr_snv_vcf produce_sentdhiomr_cnv produce_sentdhiomr_mito produce_sentdhiomr_segdup produce_expansionhunter --config 'sentdhiomr={\"segdup_genes\":\"CYP11B1,NCF1,SMN1\"}' -j 125 -p -k -n",
  "completed_at": "2026-05-30T00:07:07Z",
  "exit_code": 0,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r7_inflection-bjuice-product-v0.1_dryrun/daylily-omics-analysis",
  "session_name": --output truncated--