# R
.Rproj.user
.Rhistory
.RData
.Ruserdata
*.Rproj

# Python
__pycache__/
*.py[cod]
*.egg-info/
dist/
build/
.venv/
venv/

# Jupyter
.ipynb_checkpoints/

# Data
*.h5ad
*.rds
*.RData
*.hdf5
*.bam
*.bai
*.sam
*.vcf
*.vcf.gz
*.fastq
*.fastq.gz
*.bed
*.bigwig

# Archives
*.zip
*.tar.gz
*.tar.bz2

# OS
.DS_Store
Thumbs.db

# IDE
.vscode/
.idea/

# Environment
.env
.env.local
*.key
*.pem

# Node
node_modules/

# Local
TODO.md
plans/
docs/
mcp-servers/
scripts/
mnt/
drafts/
