LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
pangenomium/__init__.py
pangenomium/cli.py
pangenomium/utils.py
pangenomium.egg-info/PKG-INFO
pangenomium.egg-info/SOURCES.txt
pangenomium.egg-info/dependency_links.txt
pangenomium.egg-info/entry_points.txt
pangenomium.egg-info/requires.txt
pangenomium.egg-info/top_level.txt
pangenomium/commands/__init__.py
pangenomium/commands/cluster_genomes.py
pangenomium/commands/cluster_proteins.py
pangenomium/commands/cluster_proteins_from_pangenomes.py
pangenomium/commands/compile_genomes_table.py
pangenomium/commands/compile_pangenomes_table.py
pangenomium/commands/end_to_end.py
scripts/compile-core-pangenome-table.py
scripts/edgelist-to-clusters.py