Metadata-Version: 2.3
Name: cheese3d
Version: 0.1.0
Summary: Sensitive detection and analysis of whole-face movement in mice.
Author: Hou Lab CSHL
Author-email: Hou Lab CSHL <the.hou.lab@gmail.com>
Requires-Dist: pip>=25.2,<26
Requires-Dist: pandas>=2.1
Requires-Dist: hydra-core==1.3.*
Requires-Dist: aniposelib>=0.8.0
Requires-Dist: anipose>=1.1.24
Requires-Dist: opencv-python>=4.10.0.84
Requires-Dist: opencv-python-headless>=4.10.0.84
Requires-Dist: opencv-contrib-python>=4.10.0.84
Requires-Dist: pims>=0.7
Requires-Dist: av
Requires-Dist: filelock>=3.24.3
Requires-Dist: open-ephys-python-tools==0.1.12
Requires-Dist: typer-slim[standard]>=0.15.3,<0.16
Requires-Dist: questionary
Requires-Dist: textual==6.8.*
Requires-Dist: textual-fspicker==0.6.*
Requires-Dist: textual-serve==1.1.*
Requires-Dist: cheese3d-annotator==0.1.0
Requires-Dist: tensorflow<2.13 ; sys_platform == 'linux'
Requires-Dist: jax[cuda12] ; sys_platform == 'linux'
Requires-Dist: deeplabcut[tf]==2.3.5 ; sys_platform == 'linux'
Requires-Dist: tables>=3.10.1 ; sys_platform == 'darwin'
Requires-Dist: tensorflow-macos<2.13 ; sys_platform == 'darwin'
Requires-Dist: tensorflow-metal ; sys_platform == 'darwin'
Requires-Dist: jax[cpu] ; sys_platform == 'darwin'
Requires-Dist: deeplabcut[apple-mchips]==2.3.5 ; sys_platform == 'darwin'
Requires-Python: ==3.10.*
Description-Content-Type: text/markdown

# `cheese3d` Python package

[![Documentation](https://img.shields.io/badge/docs-latest-blue)](https://hou-lab-cshl.github.io/cheese3d/)

Cheese3D is a pipeline for tracking mouse facial movements built on top of existing tools ([DeepLabCut](https://github.com/DeepLabCut/DeepLabCut) and [Anipose](https://github.com/lambdaloop/anipose)). By tracking anatomically-informed keypoints using multiple cameras registered in 3D, our pipeline produces sensitive, high-precision facial movement data that can be related internal state (e.g., electrophysiology).

**NEW!** Check out the [Cheese3D paper](https://www.nature.com/articles/s41593-026-02262-8).

Please see the [repository](https://github.com/Hou-Lab-CSHL/cheese3d) for complete information.
