README.md
pyproject.toml
src/esm_sumo/__init__.py
src/esm_sumo.egg-info/PKG-INFO
src/esm_sumo.egg-info/SOURCES.txt
src/esm_sumo.egg-info/dependency_links.txt
src/esm_sumo.egg-info/requires.txt
src/esm_sumo.egg-info/top_level.txt
src/esm_sumo/data/__init__.py
src/esm_sumo/data/datasets.py
src/esm_sumo/data/parsers.py
src/esm_sumo/data/datasets/128-mer Dataset/Sumoylation_neg_Hard_Test.fasta
src/esm_sumo/data/datasets/128-mer Dataset/Sumoylation_neg_Test.fasta
src/esm_sumo/data/datasets/128-mer Dataset/Sumoylation_neg_Train.fasta
src/esm_sumo/data/datasets/128-mer Dataset/Sumoylation_pos_Hard_Test.fasta
src/esm_sumo/data/datasets/128-mer Dataset/Sumoylation_pos_Test.fasta
src/esm_sumo/data/datasets/128-mer Dataset/Sumoylation_pos_Train.fasta
src/esm_sumo/data/datasets/128-mer Full Homology Dataset/Sumoylation_neg_Hard_Test.fasta
src/esm_sumo/data/datasets/128-mer Full Homology Dataset/Sumoylation_neg_Test.fasta
src/esm_sumo/data/datasets/128-mer Full Homology Dataset/Sumoylation_neg_Train.fasta
src/esm_sumo/data/datasets/128-mer Full Homology Dataset/Sumoylation_pos_Hard_Test.fasta
src/esm_sumo/data/datasets/128-mer Full Homology Dataset/Sumoylation_pos_Test.fasta
src/esm_sumo/data/datasets/128-mer Full Homology Dataset/Sumoylation_pos_Train.fasta
src/esm_sumo/data/datasets/128-mer Representative Homology Dataset/Sumoylation_neg_Hard_Test.fasta
src/esm_sumo/data/datasets/128-mer Representative Homology Dataset/Sumoylation_neg_Test.fasta
src/esm_sumo/data/datasets/128-mer Representative Homology Dataset/Sumoylation_neg_Train.fasta
src/esm_sumo/data/datasets/128-mer Representative Homology Dataset/Sumoylation_pos_Hard_Test.fasta
src/esm_sumo/data/datasets/128-mer Representative Homology Dataset/Sumoylation_pos_Test.fasta
src/esm_sumo/data/datasets/128-mer Representative Homology Dataset/Sumoylation_pos_Train.fasta
src/esm_sumo/data/datasets/21-mer Matched Dataset/Sumoylation_neg_Hard_Test.fasta
src/esm_sumo/data/datasets/21-mer Matched Dataset/Sumoylation_neg_Test.fasta
src/esm_sumo/data/datasets/21-mer Matched Dataset/Sumoylation_neg_Train.fasta
src/esm_sumo/data/datasets/21-mer Matched Dataset/Sumoylation_pos_Hard_Test.fasta
src/esm_sumo/data/datasets/21-mer Matched Dataset/Sumoylation_pos_Test.fasta
src/esm_sumo/data/datasets/21-mer Matched Dataset/Sumoylation_pos_Train.fasta
src/esm_sumo/interpretability/__init__.py
src/esm_sumo/interpretability/mutagenesis.py
src/esm_sumo/interpretability/visualization.py
src/esm_sumo/models/__init__.py
src/esm_sumo/models/esm_classifier.py
src/esm_sumo/pipeline/__init__.py
src/esm_sumo/pipeline/early_stopping.py
src/esm_sumo/pipeline/evaluator.py
src/esm_sumo/pipeline/trainer.py