README.md
setup.py
bin/pyteiser_pipeline
pyteiser/IO.py
pyteiser/MI.py
pyteiser/__init__.py
pyteiser/glob_var.py
pyteiser/matchmaker.py
pyteiser/modify_seed.py
pyteiser/seeds_generator.py
pyteiser/sge.py
pyteiser/statistic_tests.py
pyteiser/structures.py
pyteiser/type_conversions.py
pyteiser.egg-info/PKG-INFO
pyteiser.egg-info/SOURCES.txt
pyteiser.egg-info/dependency_links.txt
pyteiser.egg-info/requires.txt
pyteiser.egg-info/top_level.txt
pyteiser/wrappers/__init__.py
pyteiser/wrappers/binarize_sequences.py
pyteiser/wrappers/calculate_MI_profiles.py
pyteiser/wrappers/calculate_seed_profiles.py
pyteiser/wrappers/choose_significant_seeds_v3.py
pyteiser/wrappers/combine_optimized_seeds.py
pyteiser/wrappers/combine_passed_seeds.py
pyteiser/wrappers/draw_reports_1.py
pyteiser/wrappers/filter_passed_seeds_with_CMI.py
pyteiser/wrappers/filter_profiles_by_folding.py
pyteiser/wrappers/fold_refernce_transcriptome.py
pyteiser/wrappers/optimize_seeds_single_chunk.py
pyteiser/wrappers/preprocess_custom_expression_profile.py
pyteiser/wrappers/preprocess_expression_profile_ensembl.py
pyteiser/wrappers/pyteiser_pipeline.py
pyteiser/wrappers/qsub_optimize_seeds.py
pyteiser/wrappers/qsub_universal_submission.py
pyteiser/wrappers/report_csvs.py
tests/__init__.py
tests/test_IO.py
tests/test_MI.py
tests/test_comparisons_timing.py
tests/test_elongated_seed_profile.py
tests/test_matchmaker.py
tests/test_short_compression.py