AUTHORS.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/phold/__init__.py
src/phold.egg-info/PKG-INFO
src/phold.egg-info/SOURCES.txt
src/phold.egg-info/dependency_links.txt
src/phold.egg-info/entry_points.txt
src/phold.egg-info/requires.txt
src/phold.egg-info/top_level.txt
src/phold.egg-info/zip-safe
src/phold/cnn/cnn_chkpnt/model.pt
src/phold/cnn/cnn_chkpnt_finetune/phold_db_model.pth
src/phold/cnn/cnn_chkpnt_finetune/vanilla_model.pth
src/phold/databases/db.py
src/phold/features/autotune.py
src/phold/features/create_foldseek_db.py
src/phold/features/predict_3Di.py
src/phold/features/query_remote_3Di.py
src/phold/features/run_foldseek.py
src/phold/features/autotune_data/all_phold_structures_5000.fasta.gz
src/phold/io/handle_genbank.py
src/phold/io/sub_db_outputs.py
src/phold/plot/plot.py
src/phold/results/topfunction.py
src/phold/subcommands/compare.py
src/phold/subcommands/predict.py
src/phold/utils/CITATION
src/phold/utils/VERSION
src/phold/utils/constants.py
src/phold/utils/external_tools.py
src/phold/utils/util.py
src/phold/utils/validation.py
tests/test_integration.py