Welcome to mriqc’s documentation!¶
mriqc¶
The mriqc package provides a series of NR (no-reference), IQMs (image quality metrics) to used in QAPs (quality assessment protocols) for MRI (magnetic resonance imaging).
Dependencies¶
Make sure you have FSL, N4ITK (released with ANTs), and AFNI installed, and the binaries are available in
the system’s $PATH
.
Installation¶
Just issue
pip install mriqc
Example command line
mriqc -i ~/Data/bids_dataset -o out/ -w work/