biopython>=1.86
gemmi>=0.7.4
matplotlib>=3.10.8
networkx>=3.4.2
numpy>=2.2.6
pandas>=2.3.3
coloredlogs>=15.0.1
pydssp>=0.9.1
freesasa>=2.2.1
seaborn>=0.13.2
scipy>=1.17.1

[dev]
mypy>=1.15.0
pre-commit>=4.1.0
pytest>=8.3.5
ruff>=0.11.0

[docs]
mkdocs>=1.6.1
mkdocstrings[python]>=0.29.0
mkdocs-material>=9.6.9
