.gitignore
CONTRIBUTING.md
LICENSE
NOTICE
README.md
pytest.ini
setup.cfg
setup.py
.github/workflows/ci.yml
example_data/1n8z.pdb
example_data/trastuzumab_spm.csv
images/method_diagram.png
images/protlib-designer-logo-name-dark.png
images/protlib-designer-logo-name-light.png
images/protlib-designer-logo.png
protlib_designer/__init__.py
protlib_designer/_version.py
protlib_designer/dataloader.py
protlib_designer/solution_manager.py
protlib_designer/utils.py
protlib_designer.egg-info/PKG-INFO
protlib_designer.egg-info/SOURCES.txt
protlib_designer.egg-info/dependency_links.txt
protlib_designer.egg-info/entry_points.txt
protlib_designer.egg-info/requires.txt
protlib_designer.egg-info/top_level.txt
protlib_designer/filter/filter.py
protlib_designer/filter/no_filter.py
protlib_designer/generator/generator.py
protlib_designer/generator/ilp_generator.py
protlib_designer/scorer/ifold_scorer.py
protlib_designer/scorer/plm_scorer.py
protlib_designer/scorer/scorer.py
protlib_designer/scorer/pmpnn/dataset.py
protlib_designer/scorer/pmpnn/model.py
protlib_designer/scorer/pmpnn/protein.py
protlib_designer/scorer/pmpnn/runner.py
protlib_designer/scorer/pmpnn/utils.py
protlib_designer/solver/generate_and_remove_solver.py
scripts/__init__.py
scripts/run_ifold_scorer.py
scripts/run_plm_scorer.py
scripts/run_protlib_designer.py
tests/__init__.py
tests/test_run_protlib_designer.py