CONTRIBUTING.md
HISTORY.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
docs/Makefile
docs/index.md
docs/installation.md
docs/usage.md
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docs/build/html/_static/Logo.png
docs/build/html/_static/file.png
docs/build/html/_static/minus.png
docs/build/html/_static/plus.png
docs/source/cli.md
docs/source/docker.md
docs/source/installation.md
docs/source/_static/Logo.png
src/spmetatme/__init__.py
src/spmetatme/__main__.py
src/spmetatme/cli.py
src/spmetatme/config.yaml
src/spmetatme/spMetaTME_brand.npy
src/spmetatme/spmetatme.py
src/spmetatme/utils.py
src/spmetatme.egg-info/PKG-INFO
src/spmetatme.egg-info/SOURCES.txt
src/spmetatme.egg-info/dependency_links.txt
src/spmetatme.egg-info/entry_points.txt
src/spmetatme.egg-info/requires.txt
src/spmetatme.egg-info/top_level.txt
src/spmetatme/communication/__init__.py
src/spmetatme/communication/spatial_interactions.py
src/spmetatme/data/__init__.py
src/spmetatme/data/dataloader.py
src/spmetatme/data/metabolic_model.py
src/spmetatme/layers/__init__.py
src/spmetatme/layers/transformer_hyper_conv.py
src/spmetatme/model/__init__.py
src/spmetatme/model/metabolicDGI.py
src/spmetatme/model/sp_meta_tme_model.py
src/spmetatme/module/__init__.py
src/spmetatme/module/metabolic_level_encoder.py
src/spmetatme/plotting/__init__.py
src/spmetatme/plotting/plots.py
src/spmetatme/resources/__init__.py
src/spmetatme/resources/models.json
src/spmetatme/resources/medium/DMEM_high_glucose.csv
src/spmetatme/resources/medium/DMEM_low_glucose.csv
src/spmetatme/resources/medium/IMDM.csv
src/spmetatme/resources/medium/MEM.csv
src/spmetatme/resources/medium/RPMI_1640.csv
src/spmetatme/resources/medium/__init__.py
src/spmetatme/scripts/__init__.py
src/spmetatme/scripts/infer.py
src/spmetatme/scripts/pretrain.py
src/spmetatme/train/__init__.py
src/spmetatme/train/trainer.py
src/spmetatme/utils/__init__.py
src/spmetatme/utils/utils.py
tests/__init__.py
tests/test_spmetatme.py