.gitignore
.readthedocs.yml
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
docs/Makefile
docs/make.bat
docs/archive/IMPLEMENTATION_SUMMARY.md
docs/archive/REFACTORING_COMPLETE.md
docs/archive/STATUS.md
docs/source/conf.py
docs/source/index.rst
docs/source/installation.rst
docs/source/parameters.rst
docs/source/quickstart.rst
docs/source/troubleshooting.rst
docs/source/_static/custom.css
docs/source/_templates/.gitkeep
docs/source/algorithm/index.rst
docs/source/algorithm/overview.rst
docs/source/api/index.rst
docs/source/api/scppin.rst
docs/source/examples/basic.rst
docs/source/examples/index.rst
docs/source/tutorials/basic_usage.rst
docs/source/tutorials/index.rst
examples/example_network.csv
examples/example_pvalues.csv
scppin/__init__.py
scppin/analyzer.py
scppin/graph.py
scppin/module.py
scppin/pvalues.py
scppin.egg-info/PKG-INFO
scppin.egg-info/SOURCES.txt
scppin.egg-info/dependency_links.txt
scppin.egg-info/requires.txt
scppin.egg-info/top_level.txt
scppin/core/__init__.py
scppin/core/bum_model.py
scppin/core/edge_weights.py
scppin/core/network_utils.py
scppin/core/pcst_solver.py
scppin/core/scoring.py
scppin/visualization/__init__.py
scppin/visualization/plotting.py
tests/__init__.py
tests/test_api.py
tests/test_bum_model.py
tests/test_minimal.py
tests/test_network_utils.py
tests/test_scoring.py