.cursorrules
.gitignore
.pre-commit-config.yaml
CITATION.cff
CLAUDE.md
LICENSE
MANIFEST.in
README.md
TEST_TRAIN_EXTRAS_REPORT.md
overview.png
pyproject.toml
setup.cfg
test_train_extras.py
.github/workflows/python-package-conda.yml
.venv_test_train/pyvenv.cfg
.venv_test_train/bin/Activate.ps1
.venv_test_train/bin/activate
.venv_test_train/bin/activate.csh
.venv_test_train/bin/activate.fish
.venv_test_train/bin/chardetect
.venv_test_train/bin/dask
.venv_test_train/bin/f2py
.venv_test_train/bin/fabric
.venv_test_train/bin/fonttools
.venv_test_train/bin/geff
.venv_test_train/bin/imagecodecs
.venv_test_train/bin/imageio_download_bin
.venv_test_train/bin/imageio_remove_bin
.venv_test_train/bin/isympy
.venv_test_train/bin/lsm2bin
.venv_test_train/bin/markdown-it
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.venv_test_train/bin/normalizer
.venv_test_train/bin/numba
.venv_test_train/bin/numpy-config
.venv_test_train/bin/pip
.venv_test_train/bin/pip3
.venv_test_train/bin/pip3.12
.venv_test_train/bin/pyftmerge
.venv_test_train/bin/pyftsubset
.venv_test_train/bin/pygmentize
.venv_test_train/bin/tensorboard
.venv_test_train/bin/tiff2fsspec
.venv_test_train/bin/tiffcomment
.venv_test_train/bin/tifffile
.venv_test_train/bin/torchfrtrace
.venv_test_train/bin/torchrun
.venv_test_train/bin/tqdm
.venv_test_train/bin/trackastra
.venv_test_train/bin/ttx
.venv_test_train/bin/typer
.venv_test_train/bin/wandb
.venv_test_train/bin/wb
.venv_test_train/bin/zarr
.venv_test_train/share/man/man1/isympy.1
.venv_test_train/share/man/man1/ttx.1
artwork/icon.pdf
artwork/icon.png
artwork/icon.svg
artwork/icon_squared.pdf
artwork/icon_squared.svg
artwork/trackastra_logo.pdf
artwork/trackastra_logo.png
artwork/trackastra_logo.svg
docs/icons/docker-mark-blue.png
docs/icons/terminal-cli-fill.256x224.png
scripts/TEST_RESULTS_CORE_DEPENDENCIES.md
scripts/example_config.yaml
scripts/test_core_imports.py
scripts/train.py
tests/test_augmentations.py
tests/test_cli.py
tests/test_data.py
tests/test_features.py
tests/test_inference_api.py
tests/test_matching.py
tests/test_model.py
tests/test_pretrained.py
tests/test_train.py
trackastra/__init__.py
trackastra/_version.py
trackastra/cli.py
trackastra.egg-info/PKG-INFO
trackastra.egg-info/SOURCES.txt
trackastra.egg-info/dependency_links.txt
trackastra.egg-info/entry_points.txt
trackastra.egg-info/requires.txt
trackastra.egg-info/top_level.txt
trackastra/data/__init__.py
trackastra/data/_check_ctc.py
trackastra/data/_compute_overlap.py
trackastra/data/augmentations.py
trackastra/data/data.py
trackastra/data/distributed.py
trackastra/data/example_data.py
trackastra/data/features.py
trackastra/data/matching.py
trackastra/data/utils.py
trackastra/data/wrfeat.py
trackastra/data/resources/Fluo-N3DH-CHO_02_ERR_SEG.tif
trackastra/data/resources/Fluo-N3DH-CHO_02_img.tif
trackastra/data/resources/Fluo_Hela_02_ERR_SEG.tif
trackastra/data/resources/Fluo_Hela_02_img.tif
trackastra/data/resources/trpL_150310-11_img.tif
trackastra/data/resources/trpL_150310-11_mask.tif
trackastra/model/__init__.py
trackastra/model/model.py
trackastra/model/model_api.py
trackastra/model/model_parts.py
trackastra/model/predict.py
trackastra/model/pretrained.json
trackastra/model/pretrained.py
trackastra/model/rope.py
trackastra/tracking/__init__.py
trackastra/tracking/ilp.py
trackastra/tracking/track_graph.py
trackastra/tracking/tracking.py
trackastra/tracking/utils.py
trackastra/utils/__init__.py
trackastra/utils/utils.py