Apptainer.def
Dockerfile
LICENSE
MANIFEST.in
README.md
pyproject.toml
examples/real_genomes/count_trf.py
examples/real_genomes/real_genomes_benchmark.md
examples/real_genomes/run_real_benchmark.py
examples/real_genomes/fasta/NC_000913.3_Ecoli_MG1655.fasta
examples/real_genomes/fasta/NC_000932.1_Arabidopsis_cp.fasta
examples/real_genomes/fasta/NC_011033.1_Oryza_mt.fasta
examples/real_genomes/fasta/yeast_16_chromosomes.fasta
nextssr/__init__.py
nextssr/__main__.py
nextssr/artifacts.py
nextssr/cli.py
nextssr/compound.py
nextssr/config.py
nextssr/epcr.py
nextssr/finder.py
nextssr/gpu.py
nextssr/models.py
nextssr/primer.py
nextssr/provenance.py
nextssr/utils.py
nextssr.egg-info/PKG-INFO
nextssr.egg-info/SOURCES.txt
nextssr.egg-info/dependency_links.txt
nextssr.egg-info/entry_points.txt
nextssr.egg-info/requires.txt
nextssr.egg-info/top_level.txt
nextssr/outputs/gff3.py
nextssr/outputs/tsv.py
recipe/build.sh
recipe/meta.yaml
tests/test_e2e.py
tests/test_epcr.py