README.filtering.md
pyproject.toml
ugbio_filtering/__init__.py
ugbio_filtering/blacklist.py
ugbio_filtering/filter_low_af_ratio_to_background.py
ugbio_filtering/filter_variants_pipeline.py
ugbio_filtering/multiallelics.py
ugbio_filtering/spandel.py
ugbio_filtering/tprep_constants.py
ugbio_filtering/train_models_pipeline.py
ugbio_filtering/training_prep.py
ugbio_filtering/training_prep_cnv_pipeline.py
ugbio_filtering/training_prep_pipeline.py
ugbio_filtering/transformers.py
ugbio_filtering/variant_filtering_utils.py
ugbio_filtering.egg-info/PKG-INFO
ugbio_filtering.egg-info/SOURCES.txt
ugbio_filtering.egg-info/dependency_links.txt
ugbio_filtering.egg-info/entry_points.txt
ugbio_filtering.egg-info/requires.txt
ugbio_filtering.egg-info/top_level.txt
ugbio_filtering/scripts/remove_vcf_duplicates.sh
ugbio_filtering/sec/__init__.py
ugbio_filtering/sec/allele_counter.py
ugbio_filtering/sec/annotate_cad_db.py
ugbio_filtering/sec/assess_sec_concordance.py
ugbio_filtering/sec/conditional_allele_distribution.py
ugbio_filtering/sec/conditional_allele_distribution_correlator.py
ugbio_filtering/sec/conditional_allele_distributions.py
ugbio_filtering/sec/convert_blacklist_to_bed.py
ugbio_filtering/sec/correct_systematic_errors.py
ugbio_filtering/sec/error_correction_training.py
ugbio_filtering/sec/evaluate_locus_observation.py
ugbio_filtering/sec/extrapolate_allele_counts.py
ugbio_filtering/sec/merge_conditional_allele_distributions.py
ugbio_filtering/sec/read_counts.py
ugbio_filtering/sec/sec_pipeline_utils.py
ugbio_filtering/sec/sec_training.py
ugbio_filtering/sec/sec_validation.py
ugbio_filtering/sec/systematic_error_correction_call.py
ugbio_filtering/sec/systematic_error_correction_caller.py
ugbio_filtering/sec/systematic_error_correction_record.py