LICENSE
MANIFEST.in
README.md
pyproject.toml
ec3D.egg-info/PKG-INFO
ec3D.egg-info/SOURCES.txt
ec3D.egg-info/dependency_links.txt
ec3D.egg-info/entry_points.txt
ec3D.egg-info/requires.txt
ec3D.egg-info/top_level.txt
ec3d/__init__.py
ec3d/expand_matrix.py
ec3d/extract_matrix.py
ec3d/main.py
ec3d/objective_value.py
ec3d/plot_interactions.py
ec3d/plot_structure.py
ec3d/significant_interactions.py
ec3d/spatial_structure.py
ec3d/util.py
ec3d/data_repo/AC_oncogene_set_GRCh37.gff
ec3d/data_repo/AC_oncogene_set_hg38.gff
ec3d/data_repo/AC_oncogene_set_mm10.gff
scripts/clusters2interval.py
scripts/convergence_plot.py
scripts/correlation_plot.py
scripts/filter_sv.py
scripts/mbb.py
simulation/simulation.py
simulation/util.py