LICENSE
README.md
pyproject.toml
mrsiprep.egg-info/PKG-INFO
mrsiprep.egg-info/SOURCES.txt
mrsiprep.egg-info/dependency_links.txt
mrsiprep.egg-info/entry_points.txt
mrsiprep.egg-info/requires.txt
mrsiprep.egg-info/top_level.txt
mrsiprep/cli/parser.py
mrsiprep/cli/run.py
mrsiprep/config/defaults.py
mrsiprep/config/settings.py
mrsiprep/config/t1_literature.json
mrsiprep/config/t1_values.py
mrsiprep/config/presets/imaging-neurosci-2026.json
mrsiprep/config/presets/nature-comms-2025.json
mrsiprep/connectivity/connectivity.py
mrsiprep/connectivity/edges.py
mrsiprep/connectivity/export.py
mrsiprep/connectivity/nodes.py
mrsiprep/data/atlas/README.md
mrsiprep/data/atlas/chimera-LFMIHIFIS-2/chimera-LFMIHIFIS-2.nii.gz
mrsiprep/data/atlas/chimera-LFMIHIFIS-2/chimera-LFMIHIFIS-2.tsv
mrsiprep/data/atlas/chimera-LFMIHIFIS-3/chimera-LFMIHIFIS-3.nii.gz
mrsiprep/data/atlas/chimera-LFMIHIFIS-3/chimera-LFMIHIFIS-3.tsv
mrsiprep/data/atlas/chimera-LFMIHISIFF-3/chimera-LFMIHISIFF-3.nii.gz
mrsiprep/data/atlas/chimera-LFMIHISIFF-3/chimera-LFMIHISIFF-3.tsv
mrsiprep/data/atlas/chimera-MFMIHIFIS-197/chimera-MFMIHIFIS-197.nii.gz
mrsiprep/data/atlas/chimera-MFMIHIFIS-197/chimera-MFMIHIFIS-197.tsv
mrsiprep/data/atlas/chimera-SFMIHIFIS-200/chimera-SFMIHIFIS-200.nii.gz
mrsiprep/data/atlas/chimera-SFMIHIFIS-200/chimera-SFMIHIFIS-200.tsv
mrsiprep/interfaces/ants.py
mrsiprep/interfaces/bids_import.py
mrsiprep/interfaces/bids_import_gui.py
mrsiprep/interfaces/chimera.py
mrsiprep/interfaces/freesurfer.py
mrsiprep/interfaces/fsl.py
mrsiprep/io/bids.py
mrsiprep/io/derivatives.py
mrsiprep/io/loaders.py
mrsiprep/io/mrsinmrs.py
mrsiprep/io/naming.py
mrsiprep/io/validators.py
mrsiprep/mrsi/filtering.py
mrsiprep/mrsi/masks.py
mrsiprep/mrsi/pvc.py
mrsiprep/mrsi/quality.py
mrsiprep/mrsi/reference.py
mrsiprep/mrsi/resampling.py
mrsiprep/mrsi/t1_correction.py
mrsiprep/parcellation/atlas_registry.py
mrsiprep/parcellation/base.py
mrsiprep/parcellation/chimera_native.py
mrsiprep/parcellation/extraction.py
mrsiprep/parcellation/labels.py
mrsiprep/parcellation/metprofiles.py
mrsiprep/parcellation/mni_atlas.py
mrsiprep/parcellation/synthseg.py
mrsiprep/parcellation/tissue_regression.py
mrsiprep/registration/mrsi_to_t1.py
mrsiprep/registration/subject_template.py
mrsiprep/registration/t1_to_mni.py
mrsiprep/registration/transforms.py
mrsiprep/reports/connectivity_overview.py
mrsiprep/reports/html.py
mrsiprep/reports/leakage_qc.py
mrsiprep/reports/mrsi_preproc.py
mrsiprep/reports/parcel_figures.py
mrsiprep/reports/parcel_qc.py
mrsiprep/reports/parcellation_overview.py
mrsiprep/reports/qc_combine.py
mrsiprep/reports/registration_overview.py
mrsiprep/reports/slices.py
mrsiprep/reports/t1_correction.py
mrsiprep/reports/tissue.py
mrsiprep/tissue/fractions.py
mrsiprep/tissue/fuzzy_cmeans.py
mrsiprep/tissue/psf.py
mrsiprep/tissue/synthseg_fast.py
mrsiprep/utils/banner.py
mrsiprep/utils/debug.py
mrsiprep/utils/images.py
mrsiprep/utils/logging.py
mrsiprep/utils/misc.py
mrsiprep/utils/provenance.py
mrsiprep/utils/subprocess_utils.py
mrsiprep/utils/tables.py
mrsiprep/workflows/anatomical.py
mrsiprep/workflows/base.py
mrsiprep/workflows/connectivity.py
mrsiprep/workflows/mrsi.py
mrsiprep/workflows/parcellation.py
mrsiprep/workflows/participant.py
mrsiprep/workflows/registration.py
mrsiprep/workflows/reports.py
mrsiprep/workflows/tissue.py
mrsiprep/workflows/nipype_engine/__init__.py
mrsiprep/workflows/nipype_engine/adapters.py
mrsiprep/workflows/nipype_engine/build.py
mrsiprep/workflows/nipype_engine/nodes.py
mrsiprep/workflows/nipype_engine/run.py
tests/test_bids_inputs.py
tests/test_cli.py
tests/test_cli_run.py
tests/test_connectivity.py
tests/test_derivative_names.py
tests/test_fsl_apply_transforms.py
tests/test_fsl_fnirt.py
tests/test_fuzzy_cmeans.py
tests/test_leakage_qc.py
tests/test_mrsinmrs.py
tests/test_nipype_engine.py
tests/test_participant_preflight.py
tests/test_processing_modes.py
tests/test_provenance.py
tests/test_psf.py
tests/test_pvc.py
tests/test_qc_reports.py
tests/test_resampling.py
tests/test_settings_validation.py
tests/test_synthmrsi_project_e2e.py
tests/test_synthseg_fast.py
tests/test_t1_correction.py
tests/test_tissue_regression.py
tests/test_validators_units.py