# Pfam models to include in the subset HMM for MTase/RM candidate detection.
# Entries can be Pfam accessions (PFxxxxx) or model NAME strings.
#
# Seed list (expand over time):
PF01555  # N6_N4_Mtase (m6A/m4C MTases; common catalytic domain)
PF00145  # DNA_methylase (m5C MTases; common catalytic domain)
PF02384  # N6_Mtase (Type I/IC N-6 adenine methylase core domain)
PF12161  # HsdM_N (Type I HsdM N-terminal support domain; not candidate-level alone)
PF01420  # Methylase_S (Type I specificity/TRD context; not an MTase candidate)
PF04313  # HSDR_N (Type I restriction subunit context; not an MTase candidate)
