LICENSE
README.md
setup.py
bin/ectyper
ectyper/__init__.py
ectyper/commandLineOptions.py
ectyper/definitions.py
ectyper/ectyper.py
ectyper/genomeFunctions.py
ectyper/init.py
ectyper/loggingFunctions.py
ectyper/predictionFunctions.py
ectyper/speciesIdentification.py
ectyper/subprocess_util.py
ectyper.egg-info/PKG-INFO
ectyper.egg-info/SOURCES.txt
ectyper.egg-info/dependency_links.txt
ectyper.egg-info/entry_points.txt
ectyper.egg-info/not-zip-safe
ectyper.egg-info/requires.txt
ectyper.egg-info/top_level.txt
ectyper/Data/__init__.py
ectyper/Data/ectyper_alleles_db.json
ectyper/Data/ectyper_patho_stx_toxin_typing_database.json
test/test_O_serotyping.py
test/test_complex_inputs.py
test/test_ectyper_integration.py
test/test_ectyper_speciesID.py
test/test_shiga_and_pathotyping.py