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CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
README.md
SECURITY.md
changelog.md
pyproject.toml
requirements-dev.txt
requirements-doc.txt
requirements.txt
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braincell/__init__.py
braincell/_base.py
braincell/_base_test.py
braincell/_misc.py
braincell/_multi_compartment.py
braincell/_single_compartment.py
braincell/_typing.py
braincell.egg-info/PKG-INFO
braincell.egg-info/SOURCES.txt
braincell.egg-info/dependency_links.txt
braincell.egg-info/requires.txt
braincell.egg-info/top_level.txt
braincell/channel/__init__.py
braincell/channel/calcium.py
braincell/channel/hyperpolarization_activated.py
braincell/channel/leaky.py
braincell/channel/potassium.py
braincell/channel/potassium_calcium.py
braincell/channel/sodium.py
braincell/ion/__init__.py
braincell/ion/calcium.py
braincell/ion/potassium.py
braincell/ion/sodium.py
braincell/morph/__init__.py
braincell/morph/_branch_tree.py
braincell/morph/_from_asc.py
braincell/morph/_from_swc.py
braincell/morph/_morphology.py
braincell/morph/_morphology_test.py
braincell/morph/_utils.py
braincell/morph/_utils_test.py
braincell/neuron/__init__.py
braincell/neuron/deprecation_test.py
braincell/quad/__init__.py
braincell/quad/_integrator.py
braincell/quad/_integrator_backward_euler.py
braincell/quad/_integrator_diffrax.py
braincell/quad/_integrator_exp_euler.py
braincell/quad/_integrator_exp_euler_test.py
braincell/quad/_integrator_implicit.py
braincell/quad/_integrator_protocol.py
braincell/quad/_integrator_runge_kutta.py
braincell/quad/_integrator_runge_kutta_test.py
braincell/quad/_integrator_staggered.py
braincell/quad/_integrator_util.py
braincell/quad/_integrator_voltage_solver.py
braincell/synapse/__init__.py
braincell/synapse/markov.py
dev/MC.ipynb
dev/benchmark_sparse_solver.py
dev/newton_test.ipynb
dev/asc_file/golgi.asc
dev/swc_file/io.swc
docs/Makefile
docs/auto_generater.py
docs/conf.py
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docs/make.bat
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docs/_static/cell.png
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docs/apis/braincell.ion.rst
docs/apis/braincell.rst
docs/apis/braincell.synapse.rst
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docs/apis/morphology.rst
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examples/MC11_simple_dendrite_model.py
examples/MC11_simple_dendrite_model_fitting_by_adam.py
examples/MC11_simple_dendrite_model_simulation.py
examples/SC01_fitting_a_hh_neuron.py
examples/SC02_calcium_activation_functions.py
examples/SC03_COBA_HH_2007_braincell.py
examples/SC04_hh_neuron.py
examples/SC05_thalamus_single_compartment_neurons.py
examples/SC06_unified_thalamus_model.py
examples/SC07_Straital_beta_oscillation_2011.py
examples/MC13_golgi_model/braincell_simulation.py
examples/MC13_golgi_model/golgi.asc
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examples/MC13_golgi_model/golgi_NEURON/GOL/pair-140514-C2-1_split_1.asc
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examples/MC13_golgi_model/golgi_NEURON/mod_gol/GOLGI_Ampa_pf_aa_det_vi.mod
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examples/MC13_golgi_model/golgi_NEURON/mod_gol/cdp5StCmod.mod
examples/neuron_data/input_traces_hh.csv
examples/neuron_data/output_traces_hh.csv