numpy>=1.24
pandas>=2.0
matplotlib>=3.7
seaborn>=0.12
scipy>=1.10
scikit-learn>=1.3
customtkinter>=5.2
tqdm>=4.65
biopython>=1.81
networkx>=3.0
plotly>=5.0

[api]
fastapi>=0.100
uvicorn>=0.23
python-jose[cryptography]>=3.3
slowapi>=0.1.9

[bio]
goatools>=1.3
gseapy>=1.0
cutadapt>=4.0
scanpy>=1.9
anndata>=0.9
scikit-bio>=0.5
biotite>=0.37
ete3>=3.1
cobra>=3.0
shap>=0.42
umap-learn>=0.5
statsmodels>=0.14

[cloning]

[dev]
pytest>=7.0
pytest-cov>=4.0
pytest-xdist>=3.0

[full]
biosuite-ultra[bio]
biosuite-ultra[api]
biosuite-ultra[notebook]
biosuite-ultra[parallel]
pysam>=0.21

[notebook]
ipython>=8.0
ipywidgets>=8.0

[parallel]
