LICENSE
README.md
pyproject.toml
docs/api.rst
docs/conf.py
docs/index.rst
docs/input-output.rst
docs/installation.rst
docs/revision-log.rst
docs/_static/.gitkeep
pyEpiAneufinder/.gitignore
pyEpiAneufinder/__init__.py
pyEpiAneufinder/assign_somy.py
pyEpiAneufinder/distance_statistics.py
pyEpiAneufinder/evaluate_cnv_results.py
pyEpiAneufinder/get_breakpoints.py
pyEpiAneufinder/karyotype_metrics.py
pyEpiAneufinder/makeWindows.py
pyEpiAneufinder/plotting.py
pyEpiAneufinder/postprocessing.py
pyEpiAneufinder/pyEpiAneufinder.py
pyEpiAneufinder/pyEpiAneufinder_v1.py
pyEpiAneufinder/render_fragments.py
pyEpiAneufinder.egg-info/PKG-INFO
pyEpiAneufinder.egg-info/SOURCES.txt
pyEpiAneufinder.egg-info/dependency_links.txt
pyEpiAneufinder.egg-info/requires.txt
pyEpiAneufinder.egg-info/top_level.txt
sample_data/Karyogram.png
sample_data/hg38-blacklist.v2.bed
sample_data/karyo_annot.png
sample_data/sample.tsv.gz
sample_data/scatter_aneu_heterogen.png
sample_data/somy_profile_cell.png
tests/test_karyo_gainloss.py
tests/test_make_windows.py
tests/test_metrics.py
tests/test_public_api.py
tests/test_split_subclones.py