{% extends 'report/layouts/base.html' %} {% block body %}
{{ _('Sample') }} | {{ _('Group') }} | {{ _('Cutoff') }} [x] |
---|---|---|
{{ sample.id }} | {{ sample.group_id }} | {{ sample.cutoff }} |
{{ _('Sample') }} | {{ _('Average coverage') }} [x] | {{ _('Average completeness') }} [%] |
---|---|---|
{{ sample_id }} | {{ coverage|round(3) }} | {{ (completeness * 100)|round(3) }} |
{{ _('Sample') }} | {{ _('Diagnostic yield') }} [%] |
---|---|
{{ sample_id }} | {{ (value * 100)|round(3) }} |
{{ _('Sample') }} | {{ _('Gender') }} | {{ _('Average coverage') }} [x] | |
---|---|---|---|
{{ _('Chromosome') }} X | {{ _('Chromosome') }} Y | ||
{{ sample_id }} | {{ _(gender) }} | {{ x_coverage|round(3) }} | {{ y_coverage|round(3) }} |
{{ _('The parts of the genome that has been analyzsed') }} {{ _('is composed of all protein coding, exonic intervals') }} {{ _('referenced in the') }} {{ _('CCDS database') }} . {{ _('Additionally, the data also includes spicing sites') }} ({{ _('donator and acceptor positions') }}, {{ _('two bases on either of each exon') }}.)
{{ _('Coverage') }}: {{ _('An alternative measure of sequence depth') }}. {{ _('It is defined as the ratio of bases') }} {{ _('sequenced deeper than a specified cutoff') }}, {{ _('e.g. 10x') }}. {{ _('The current cutoff is defined per sample') }} {{ _('and is found i the "Cutoff" column (first table)') }}.
{{ _('Completeness') }}: {{ _('gives an overview of the success of sequencing') }}. {{ _("It's defined as the ratio of transcripts") }} {{ _('with a completeness of') }}100%.
{{ _('The measure of coverage was genereated through matching of gene IDs from') }}
{{ config.CHANJO_PANEL_CAPTION }}
.
{{ _('Note that estimations were made regarding coverage and completeness') }}
{{ _('on the level of transcripts') }}.