LICENSE
MANIFEST.in
Makefile
README.md
environment.yml
pyproject.toml
setup.py
csrc/CMakeLists.txt
csrc/include/knn_regressor.h
csrc/src/bindings.cpp
csrc/src/knn_regressor.cpp
data/example/toy_demo.h5
data/example/toy_fi_network.txt
gae_delta/__init__.py
gae_delta/_version.py
gae_delta.egg-info/PKG-INFO
gae_delta.egg-info/SOURCES.txt
gae_delta.egg-info/dependency_links.txt
gae_delta.egg-info/entry_points.txt
gae_delta.egg-info/requires.txt
gae_delta.egg-info/top_level.txt
gae_delta/configs/config.yaml
gae_delta/configs/lihc_fisher.yaml
gae_delta/configs/lihc_nonneg.yaml
gae_delta/configs/lihc_run.yaml
gae_delta/configs/lihc_shared.yaml
gae_delta/configs/lihc_shared_fisher.yaml
gae_delta/configs/lihc_tn.yaml
gae_delta/configs/perturb_bak1.yaml
gae_delta/configs/data/paths.yaml
gae_delta/configs/experiment/default.yaml
gae_delta/configs/model/gae.yaml
gae_delta/configs/model/mlp.yaml
gae_delta/core/__init__.py
gae_delta/core/graph/__init__.py
gae_delta/core/graph/_adjacency.c
gae_delta/core/graph/_adjacency.pyx
gae_delta/core/graph/_correlation.c
gae_delta/core/graph/_correlation.pyx
gae_delta/core/graph/builder.py
gae_delta/core/graph/features.py
gae_delta/core/graph/fisher_z.py
gae_delta/core/model/__init__.py
gae_delta/core/model/decoder.py
gae_delta/core/model/encoder.py
gae_delta/core/model/gae.py
gae_delta/core/model/mlp.py
gae_delta/core/selection/__init__.py
gae_delta/core/selection/isolation_forest.py
gae_delta/core/shift/__init__.py
gae_delta/core/shift/embedding.py
gae_delta/core/shift/fusion.py
gae_delta/core/shift/knn_residual.py
gae_delta/data/__init__.py
gae_delta/data/network/__init__.py
gae_delta/data/network/reactome_fi.py
gae_delta/data/tcga/__init__.py
gae_delta/data/tcga/clinical.py
gae_delta/data/tcga/cnv.py
gae_delta/data/tcga/loader.py
gae_delta/data/tcga/methylation.py
gae_delta/data/tcga/rna.py
gae_delta/data/transforms/__init__.py
gae_delta/data/transforms/normalize.py
gae_delta/evaluation/__init__.py
gae_delta/evaluation/cross_validation.py
gae_delta/evaluation/metrics.py
gae_delta/pipeline/__init__.py
gae_delta/pipeline/__main__.py
gae_delta/pipeline/runner.py
gae_delta/pipeline/stage1_preprocess.py
gae_delta/pipeline/stage2_graph.py
gae_delta/pipeline/stage3_train_gae.py
gae_delta/pipeline/stage4_select_embed.py
gae_delta/pipeline/stage5_classify.py
gae_delta/utils/__init__.py
gae_delta/utils/io.py
gae_delta/utils/logging.py
gae_delta/utils/registry.py
gae_delta/utils/seed.py
tests/test_gae_model.py
tests/test_graph_builder.py
tests/test_shift.py