Metadata-Version: 2.4
Name: anu_ctlab_qemscan_bse_to_zarr3
Version: 0.1.0
Summary: Convert QEMSCAN BSE data to a Zarr V3 image pyramid with OME-Zarr metadata
Project-URL: Repository, https://github.com/MaterialsPhysicsANU/anu_ctlab_qemscan_bse_to_zarr3.git
Project-URL: Changelog, https://github.com/MaterialsPhysicsANU/anu_ctlab_qemscan_bse_to_zarr3/blob/main/CHANGELOG.md
Author-email: Lachlan Deakin <ljdgit@gmail.com>
License: MIT License
Keywords: bse,qemscan,zarr,zarr-v3
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Topic :: File Formats
Classifier: Topic :: Scientific/Engineering
Requires-Python: >=3.12
Requires-Dist: numpy>=1.26.4
Requires-Dist: pydantic-xml~=2.14.1
Requires-Dist: tifffile[codecs]~=2024.12.12
Requires-Dist: typer~=0.15.1
Requires-Dist: zarr~=3.0.0rc1
Description-Content-Type: text/markdown

# anu_ctlab_qemscan_bse_to_zarr3

Convert a QEMSCAN BSE pyramid to the Zarr V3 storage format with OME-Zarr metadata.

Unlike the export functionality available in `nanomin`, this method retains the original data type (e.g. 16-bit).

## Installation

```shell
pip install anu-ctlab-qemscan-bse-to-zarr3
```

## Usage (CLI)

```text
 Usage: qemscan_bse_to_zarr3 [OPTIONS] INPUT OUTPUT

 Convert QEMSCAN BSE data to a Zarr V3 image pyramid with OME-Zarr metadata

╭─ Arguments ───────────────────────────────────────────────────────────────────╮
│ *    input       PATH  Input QEMSCAN BSE directory [default: None] [required] │
│ *    output      PATH  Input Zarr V3 directory [default: None] [required]     │
╰───────────────────────────────────────────────────────────────────────────────╯
╭─ Options ─────────────────────────────────────────────────────────────────────╮
│ --debug    --no-debug      Print debug information [default: no-debug]        │
│ --help                     Show this message and exit.                        │
╰───────────────────────────────────────────────────────────────────────────────╯
```
