.pre-commit-config.yaml
LICENSE
MANIFEST.in
Makefile
README.md
pyproject.toml
.github/ISSUE_TEMPLATE.md
.github/TEST_FAIL_TEMPLATE.md
.github/dependabot.yml
.github/workflows/ci.yml
src/image2image_reg/__init__.py
src/image2image_reg/__main__.py
src/image2image_reg/_typing.py
src/image2image_reg/_version.py
src/image2image_reg/enums.py
src/image2image_reg/py.typed
src/image2image_reg/wrapper.py
src/image2image_reg.egg-info/PKG-INFO
src/image2image_reg.egg-info/SOURCES.txt
src/image2image_reg.egg-info/dependency_links.txt
src/image2image_reg.egg-info/entry_points.txt
src/image2image_reg.egg-info/requires.txt
src/image2image_reg.egg-info/top_level.txt
src/image2image_reg/cli/__init__.py
src/image2image_reg/cli/_common.py
src/image2image_reg/cli/elastix.py
src/image2image_reg/cli/merge.py
src/image2image_reg/cli/simple_valis.py
src/image2image_reg/cli/valis.py
src/image2image_reg/elastix/__init__.py
src/image2image_reg/elastix/convert.py
src/image2image_reg/elastix/figures.py
src/image2image_reg/elastix/registration.py
src/image2image_reg/elastix/registration_map.py
src/image2image_reg/elastix/registration_utils.py
src/image2image_reg/elastix/transform.py
src/image2image_reg/elastix/transform_sequence.py
src/image2image_reg/elastix/transform_utils.py
src/image2image_reg/elastix/transformation_map.py
src/image2image_reg/elastix/visuals.py
src/image2image_reg/elastix/wsireg.py
src/image2image_reg/models/__init__.py
src/image2image_reg/models/bbox.py
src/image2image_reg/models/export.py
src/image2image_reg/models/modality.py
src/image2image_reg/models/preprocessing.py
src/image2image_reg/preprocessing/__init__.py
src/image2image_reg/preprocessing/convert.py
src/image2image_reg/preprocessing/mixin.py
src/image2image_reg/preprocessing/step.py
src/image2image_reg/preprocessing/utilities.py
src/image2image_reg/preprocessing/workflow.py
src/image2image_reg/utils/__init__.py
src/image2image_reg/utils/_test.py
src/image2image_reg/utils/affine.py
src/image2image_reg/utils/preprocessing.py
src/image2image_reg/utils/transform_utils.py
src/image2image_reg/utils/utilities.py
src/image2image_reg/utils/visuals.py
src/image2image_reg/valis/__init__.py
src/image2image_reg/valis/detect.py
src/image2image_reg/valis/matcher.py
src/image2image_reg/valis/preprocessing.py
src/image2image_reg/valis/slide_io.py
src/image2image_reg/valis/transform.py
src/image2image_reg/valis/utilities.py
src/image2image_reg/workflows/__init__.py
src/image2image_reg/workflows/_base.py
src/image2image_reg/workflows/elastix.py
src/image2image_reg/workflows/merge.py
src/image2image_reg/workflows/transform.py
src/image2image_reg/workflows/valis.py
tests/test_cli.py
tests/test_models.py
tests/test_preprocessing.py
tests/test_register.py
tests/test_transform_sequence.py
tests/_test_data/complex_linear_reg_transform.json
tests/_test_data/config.json
tests/_test_data/ellipse_affine.json
tests/_test_data/ellipse_mask.tiff
tests/_test_data/ellipse_moving.tiff
tests/_test_data/ellipse_target.tiff
tests/_test_data/no_initial_n=2_transformations.json
tests/_test_data/polygon_moving.tiff
tests/_test_data/polygon_target.tiff
tests/_test_data/polygons.geojson