[console_scripts]
abca_cache = unravel.allen_institute.abca.cache:main
abca_mean_expression_color_scale = unravel.allen_institute.abca.sunburst.mean_expression_color_scale:main
abca_merfish_cells_to_nii = unravel.allen_institute.abca.merfish.merfish_cells_to_nii:main
abca_merfish_expression_to_nii = unravel.allen_institute.abca.merfish.merfish_expression_to_nii:main
abca_merfish_filter = unravel.allen_institute.abca.merfish.merfish_filter:main
abca_merfish_filter_by_mask = unravel.allen_institute.abca.merfish.merfish_filter_by_mask:main
abca_merfish_join_gene = unravel.allen_institute.abca.merfish.merfish_join_gene:main
abca_merfish_slice = unravel.allen_institute.abca.merfish.merfish_slice:main
abca_percent_expression_color_scale = unravel.allen_institute.abca.sunburst.percent_expression_color_scale:main
abca_scRNAseq_expression = unravel.allen_institute.abca.scRNA_seq.expression:main
abca_scRNAseq_filter = unravel.allen_institute.abca.scRNA_seq.filter:main
abca_scRNAseq_join_gene = unravel.allen_institute.abca.scRNA_seq.join_gene:main
abca_sunburst = unravel.allen_institute.abca.sunburst.sunburst:main
abca_sunburst_expression = unravel.allen_institute.abca.sunburst.sunburst_expression:main
abca_sunburst_filter_by_expression = unravel.allen_institute.abca.sunburst.abca_sunburst_filter_by_expression:main
abca_sunburst_filter_by_proportion = unravel.allen_institute.abca.sunburst.sunburst_filter_by_proportion:main
abce_merfish = unravel.allen_institute.abca.merfish:main
agg = unravel.utilities.aggregate_files_from_sample_dirs:main
agg_rec = unravel.utilities.aggregate_files_recursively:main
apply_mask = unravel.voxel_stats.apply_mask:main
atlas_relabel = unravel.image_tools.atlas.relabel_nii:main
atlas_wireframe = unravel.image_tools.atlas.wireframe:main
avg = unravel.image_tools.avg:main
bbox = unravel.image_tools.bbox:main
c2m = unravel.warp.ccf30_to_merfish:main
cache = unravel.allen_institute.abca.cache:main
cbm = unravel.cluster_stats.brain_model:main
cfi = unravel.cluster_stats.find_incongruent_clusters:main
ci = unravel.cluster_stats.index:main
clean_tifs = unravel.utilities.clean_tif_dirs:main
clusters = unravel.cluster_stats.clusters:main
cmi = unravel.cluster_stats.mean_IF:main
cmis = unravel.cluster_stats.mean_IF_summary:main
cod = unravel.cluster_stats.org_data:main
cols = unravel.tabular.columns:main
conv = unravel.image_io.convert_img:main
crop_cluster = unravel.cluster_stats.crop_cluster:main
cs = unravel.cluster_stats.cstats:main
csc = unravel.cluster_stats.cstats_summary_config:main
css = unravel.cluster_stats.summary:main
cstats = unravel.cluster_stats.cstats:main
cstats_brain_model = unravel.cluster_stats.brain_model:main
cstats_clusters = unravel.cluster_stats.clusters:main
cstats_crop = unravel.cluster_stats.crop:main
cstats_fdr = unravel.cluster_stats.fdr:main
cstats_fdr_range = unravel.cluster_stats.fdr_range:main
cstats_find_incongruent = unravel.cluster_stats.find_incongruent_clusters:main
cstats_fstat_sig_vx_mask = unravel.cluster_stats.fstat_sig_vx_mask:main
cstats_group_data = unravel.cluster_stats.group_bilateral_data:main
cstats_index = unravel.cluster_stats.index:main
cstats_legend = unravel.cluster_stats.legend:main
cstats_mean_IF = unravel.cluster_stats.mean_IF:main
cstats_mean_IF_summary = unravel.cluster_stats.mean_IF_summary:main
cstats_mirror_indices = unravel.cluster_stats.recursively_mirror_rev_cluster_indices:main
cstats_org_data = unravel.cluster_stats.org_data:main
cstats_prism = unravel.cluster_stats.prism:main
cstats_summary = unravel.cluster_stats.summary:main
cstats_summary_config = unravel.cluster_stats.cstats_summary_config:main
cstats_sunburst = unravel.cluster_stats.sunburst:main
cstats_table = unravel.cluster_stats.table:main
cstats_validation = unravel.cluster_stats.validation:main
ct = unravel.cluster_stats.table:main
cv = unravel.cluster_stats.validation:main
dog = unravel.image_tools.DoG:main
edit_cols = unravel.tabular.edit_columns:main
effect_sizes = unravel.cluster_stats.effect_sizes.effect_sizes:main
effect_sizes_sex_abs = unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__absolute:main
effect_sizes_sex_rel = unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__relative:main
es = unravel.cluster_stats.effect_sizes.effect_sizes:main
essa = unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__absolute:main
essr = unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__relative:main
extend = unravel.image_tools.extend:main
f = unravel.cluster_stats.fdr:main
filter_rows = unravel.tabular.filter_rows:main
fr = unravel.cluster_stats.fdr_range:main
fsvm = unravel.cluster_stats.fstat_sig_vx_mask:main
gd = unravel.cluster_stats.group_bilateral_data:main
gta_ac = unravel.allen_institute.genetic_tools_atlas.auto_crop:main
gta_auto_crop = unravel.allen_institute.genetic_tools_atlas.auto_crop:main
gta_bbox_crop = unravel.allen_institute.genetic_tools_atlas.bbox_crop:main
gta_bc = unravel.allen_institute.genetic_tools_atlas.bbox_crop:main
gta_dl = unravel.allen_institute.genetic_tools_atlas.download:main
gta_download = unravel.allen_institute.genetic_tools_atlas.download:main
gta_org_samples = unravel.allen_institute.genetic_tools_atlas.org_samples:main
gta_os = unravel.allen_institute.genetic_tools_atlas.org_samples:main
gta_simplify_metadata = unravel.allen_institute.genetic_tools_atlas.simplify_metadata:main
gta_sm = unravel.allen_institute.genetic_tools_atlas.simplify_metadata:main
h2a = unravel.voxel_stats.hemi_to_LR_avg:main
h2t = unravel.image_io.h5_to_tifs:main
hd = unravel.image_io.nii_hd:main
i = unravel.image_io.nii_info:main
i2np = unravel.image_io.img_to_npy:main
i2p = unravel.image_io.img_to_points:main
img_DoG = unravel.image_tools.DoG:main
img_avg = unravel.image_tools.avg:main
img_bbox = unravel.image_tools.bbox:main
img_extend = unravel.image_tools.extend:main
img_math = unravel.image_tools.math:main
img_max = unravel.image_tools.max:main
img_modify_labels = unravel.image_tools.modify_labels:main
img_pad = unravel.image_tools.pad:main
img_rb = unravel.image_tools.rb:main
img_resample = unravel.image_tools.resample:main
img_resample_points = unravel.image_tools.resample_points:main
img_spatial_avg = unravel.image_tools.spatial_averaging:main
img_transpose = unravel.image_tools.transpose_axes:main
img_unique = unravel.image_tools.unique_intensities:main
io_convert_img = unravel.image_io.convert_img:main
io_h5_to_tifs = unravel.image_io.h5_to_tifs:main
io_img_to_npy = unravel.image_io.img_to_npy:main
io_img_to_points = unravel.image_io.img_to_points:main
io_metadata = unravel.image_io.metadata:main
io_nii = unravel.image_io.io_nii:main
io_nii_hd = unravel.image_io.nii_hd:main
io_nii_info = unravel.image_io.nii_info:main
io_nii_to_tifs = unravel.image_io.nii_to_tifs:main
io_nii_to_zarr = unravel.image_io.nii_to_zarr:main
io_points_to_img = unravel.image_io.points_to_img:main
io_reorient_nii = unravel.image_io.reorient_nii:main
io_tif_to_tifs = unravel.image_io.tif_to_tifs:main
io_zarr_compress = unravel.image_io.zarr_compress:main
io_zarr_to_nii = unravel.image_io.zarr_to_nii:main
kv_table = unravel.tabular.key_value_to_table:main
legend = unravel.cluster_stats.legend:main
lr_avg = unravel.voxel_stats.whole_to_LR_avg:main
m = unravel.image_io.metadata:main
math = unravel.image_tools.math:main
max = unravel.image_tools.max:main
mc = unravel.allen_institute.abca.merfish.merfish_cells_to_nii:main
me = unravel.allen_institute.abca.merfish.merfish_expression_to_nii:main
mecs = unravel.allen_institute.abca.sunburst.mean_expression_color_scale:main
mf = unravel.allen_institute.abca.merfish:main
mf_filter = unravel.allen_institute.abca.merfish.merfish_filter:main
mf_filter_mask = unravel.allen_institute.abca.merfish.merfish_filter_by_mask:main
mf_slice = unravel.allen_institute.abca.merfish.merfish_slice:main
mirror = unravel.voxel_stats.mirror:main
mirror_ci = unravel.cluster_stats.recursively_mirror_rev_cluster_indices:main
mjg = unravel.allen_institute.abca.merfish.merfish_join_gene:main
ml = unravel.image_tools.modify_labels:main
mms_c = unravel.allen_institute.mapmysections.csv_concat_with_source:main
mms_cell_type_proportions = unravel.allen_institute.mapmysections.cell_type_proportions:main
mms_cell_type_proportions_concat = unravel.allen_institute.mapmysections.cell_type_proportions_concat:main
mms_concat_with_source = unravel.allen_institute.mapmysections.csv_concat_with_source:main
mms_ctp = unravel.allen_institute.mapmysections.cell_type_proportions:main
mms_ctpc = unravel.allen_institute.mapmysections.cell_type_proportions_concat:main
mms_seg_summary = unravel.allen_institute.mapmysections.segmentation_summary:main
mms_soma_ratio = unravel.allen_institute.mapmysections.soma_ratio:main
mms_sr = unravel.allen_institute.mapmysections.soma_ratio:main
mms_ss = unravel.allen_institute.mapmysections.segmentation_summary:main
n2t = unravel.image_io.nii_to_tifs:main
n2z = unravel.image_io.nii_to_zarr:main
name = unravel.utilities.rename:main
nii = unravel.image_io.io_nii:main
p2i = unravel.image_io.points_to_img:main
pad = unravel.image_tools.pad:main
pecs = unravel.allen_institute.abca.sunburst.percent_expression_color_scale:main
points_compressor = unravel.utilities.points_compressor:main
prepend = unravel.utilities.prepend_conditions:main
prism = unravel.cluster_stats.prism:main
rai = unravel.register.affine_initializer:main
raic = unravel.register.affine_initializer_check:main
rb = unravel.image_tools.rb:main
rc = unravel.register.reg_check:main
rcbm = unravel.register.reg_check_brain_mask:main
rcf = unravel.register.reg_check_fsleyes:main
reg = unravel.register.reg:main
reg_affine_initializer = unravel.register.affine_initializer:main
reg_affine_initializer_check = unravel.register.affine_initializer_check:main
reg_check = unravel.register.reg_check:main
reg_check_brain_mask = unravel.register.reg_check_brain_mask:main
reg_check_fsleyes = unravel.register.reg_check_fsleyes:main
reg_prep = unravel.register.reg_prep:main
region = unravel.utilities.region_info:main
relabel = unravel.image_tools.atlas.relabel_nii:main
reorient = unravel.image_io.reorient_nii:main
resample = unravel.image_tools.resample:main
resample_points = unravel.image_tools.resample_points:main
rmi = unravel.region_stats.rstats_mean_IF:main
rmiis = unravel.region_stats.rstats_mean_IF_in_segmented_voxels:main
rmis = unravel.region_stats.rstats_mean_IF_summary:main
rna_exp = unravel.allen_institute.abca.scRNA_seq.expression:main
rna_filter = unravel.allen_institute.abca.scRNA_seq.filter:main
rna_jg = unravel.allen_institute.abca.scRNA_seq.join_gene:main
rp = unravel.register.reg_prep:main
rss = unravel.region_stats.rstats_summary:main
rstats = unravel.region_stats.rstats:main
rstats_mean_IF = unravel.region_stats.rstats_mean_IF:main
rstats_mean_IF_in_seg = unravel.region_stats.rstats_mean_IF_in_segmented_voxels:main
rstats_mean_IF_summary = unravel.region_stats.rstats_mean_IF_summary:main
rstats_summary = unravel.region_stats.rstats_summary:main
s = unravel.utilities.get_samples:main
sb = unravel.allen_institute.abca.sunburst.sunburst:main
sbe = unravel.allen_institute.abca.sunburst.sunburst_expression:main
sbm = unravel.segment.brain_mask:main
sct = unravel.segment.copy_tifs:main
seg_brain_mask = unravel.segment.brain_mask:main
seg_copy_tifs = unravel.segment.copy_tifs:main
seg_ilastik = unravel.segment.ilastik_pixel_classification:main
seg_labels_to_masks = unravel.segment.labels_to_masks:main
sfbe = unravel.allen_institute.abca.sunburst.abca_sunburst_filter_by_expression:main
sfbp = unravel.allen_institute.abca.sunburst.sunburst_filter_by_proportion:main
si = unravel.segment.ilastik_pixel_classification:main
sl2m = unravel.segment.labels_to_masks:main
spatial_avg = unravel.image_tools.spatial_averaging:main
sunburst = unravel.cluster_stats.sunburst:main
t2t = unravel.image_io.tif_to_tifs:main
tabular_columns = unravel.tabular.columns:main
tabular_edit_columns = unravel.tabular.edit_columns:main
tabular_filter_rows = unravel.tabular.filter_rows:main
tabular_key_value_to_table = unravel.tabular.key_value_to_table:main
tabular_unique_values = unravel.tabular.unique_values:main
toggle = unravel.utilities.toggle_samples:main
transpose = unravel.image_tools.transpose_axes:main
uc = unravel.unravel_commands:main
uniq_vals = unravel.tabular.unique_values:main
unique = unravel.image_tools.unique_intensities:main
unravel_commands = unravel.unravel_commands:main
ups = unravel.utilities.process_samples:main
utils_agg_files = unravel.utilities.aggregate_files_from_sample_dirs:main
utils_agg_files_rec = unravel.utilities.aggregate_files_recursively:main
utils_clean_tifs = unravel.utilities.clean_tif_dirs:main
utils_get_samples = unravel.utilities.get_samples:main
utils_points_compressor = unravel.utilities.points_compressor:main
utils_prepend = unravel.utilities.prepend_conditions:main
utils_process_samples = unravel.utilities.process_samples:main
utils_region_info = unravel.utilities.region_info:main
utils_rename = unravel.utilities.rename:main
utils_toggle = unravel.utilities.toggle_samples:main
vcf = unravel.voxel_stats.vstats_check_fsleyes:main
vp = unravel.voxel_stats.vstats_prep:main
vs = unravel.voxel_stats.vstats:main
vstats = unravel.voxel_stats.vstats:main
vstats_apply_mask = unravel.voxel_stats.apply_mask:main
vstats_check_fsleyes = unravel.voxel_stats.vstats_check_fsleyes:main
vstats_hemi_to_avg = unravel.voxel_stats.hemi_to_LR_avg:main
vstats_mirror = unravel.voxel_stats.mirror:main
vstats_prep = unravel.voxel_stats.vstats_prep:main
vstats_whole_to_avg = unravel.voxel_stats.whole_to_LR_avg:main
vstats_z_score = unravel.voxel_stats.z_score:main
vstats_z_score_cwd = unravel.voxel_stats.z_score_cwd:main
w2a = unravel.warp.to_atlas:main
w2f = unravel.warp.to_fixed:main
w2n = unravel.warp.to_native:main
warp = unravel.warp.warp:main
warp_ccf30_to_merfish = unravel.warp.ccf30_to_merfish:main
warp_points_to_atlas = unravel.warp.points_to_atlas:main
warp_to_atlas = unravel.warp.to_atlas:main
warp_to_fixed = unravel.warp.to_fixed:main
warp_to_native = unravel.warp.to_native:main
wf = unravel.image_tools.atlas.wireframe:main
wp2a = unravel.warp.points_to_atlas:main
z2n = unravel.image_io.zarr_to_nii:main
zc = unravel.image_io.zarr_compress:main
zs = unravel.voxel_stats.z_score:main
zsc = unravel.voxel_stats.z_score_cwd:main
