LICENSE
MANIFEST.in
README.md
pyproject.toml
targetsage/__init__.py
targetsage/_subpkg_init.py
targetsage/backend_support.py
targetsage/cli.py
targetsage/control_types.py
targetsage/diagnostics.py
targetsage/main.py
targetsage/staged_arrayed_cli.py
targetsage/staged_compare_cli.py
targetsage/staged_pooled_cli.py
targetsage.egg-info/PKG-INFO
targetsage.egg-info/SOURCES.txt
targetsage.egg-info/dependency_links.txt
targetsage.egg-info/entry_points.txt
targetsage.egg-info/requires.txt
targetsage.egg-info/top_level.txt
targetsage/annotation/__init__.py
targetsage/annotation/annotate.py
targetsage/data/__init__.py
targetsage/data/array_loader.py
targetsage/data/crispr_screen_pydantic.py
targetsage/data/crispr_screen_schema.py
targetsage/data/data_loader.py
targetsage/data/datasets.py
targetsage/data/loader.py
targetsage/data/plate_map_extractor.py
targetsage/data/pool_loader.py
targetsage/data/schema.py
targetsage/data/schema_loader.py
targetsage/data/schema_models.py
targetsage/data/screens_data_validator.py
targetsage/data/well_utils.py
targetsage/hits/__init__.py
targetsage/hits/filtering.py
targetsage/hits/gene_aggregation.py
targetsage/hits/hit_confidence.py
targetsage/hits/hits_scoring.py
targetsage/hits/well_scoring.py
targetsage/ingest/__init__.py
targetsage/ingest/integrator.py
targetsage/ingest/plate_reader.py
targetsage/ingest/two_channel.py
targetsage/logging/logger.py
targetsage/network/__init__.py
targetsage/network/analysis.py
targetsage/network/databases.py
targetsage/network/visualization.py
targetsage/normalization/__init__.py
targetsage/normalization/across_plate.py
targetsage/normalization/cloud.py
targetsage/normalization/legacy.py
targetsage/normalization/normalization.py
targetsage/pipeline/__init__.py
targetsage/pipeline/arrayed_workflow.py
targetsage/pipeline/config.py
targetsage/pipeline/plate_workflow.py
targetsage/pipeline/pooled_intensity_workflow.py
targetsage/pipeline/workflow_runner.py
targetsage/pipeline/workflow_schema.py
targetsage/pipeline/workflow_validators.py
targetsage/pipeline/steps/__init__.py
targetsage/pipeline/steps/enrichment.py
targetsage/pipeline/steps/hit_calling.py
targetsage/pipeline/steps/normalize.py
targetsage/pipeline/steps/plate_hit_calling.py
targetsage/pipeline/steps/plate_normalize.py
targetsage/pipeline/steps/plate_qc.py
targetsage/pipeline/steps/preprocess.py
targetsage/pipeline/steps/qc.py
targetsage/pipeline/steps/statistics.py
targetsage/pipeline/steps/validate.py
targetsage/qc/__init__.py
targetsage/qc/engine.py
targetsage/qc/report.py
targetsage/stats/__init__.py
targetsage/stats/batch_correction.py
targetsage/stats/cnv_correction.py
targetsage/stats/comparison.py
targetsage/stats/enrichment.py
targetsage/stats/nb_model.py
targetsage/stats/pooled_intensity.py
targetsage/stats/qc.py
targetsage/stats/qc_todo.py
targetsage/stats/rra.py
targetsage/stats/stattests.py
targetsage/utils/dataframe.py
targetsage/utils/pipeline_utils.py
targetsage/utils/plate_geometry.py
targetsage/utils/utilities.py
targetsage/utils/values.py
targetsage/visualization/__init__.py
targetsage/visualization/comparison_plots.py
targetsage/visualization/enrichment_plots.py
targetsage/visualization/qc_plots.py
targetsage/visualization/stattests_plots.py
targetsage/visualization/visualizer.py