STAT - Spatial Transcriptomics Analysis

STAT

Spatial Transcriptomics Analysis Tool

Dataset Directory Directory containing .h5ad AnnData file(s) with spatial coordinates (obs['x'], obs['y'] or obsm['spatial']). Optional: tissue images (.tif, .npy).

Session Name

LLM Configuration

Provider

Model e.g. gpt-5.4, gpt-5.5

API Key

Skills

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Slices

Visualization

Cell Types Gene Expression Proportions

Cell Types

Regions of Interest

Data Info

Agent Chat

Ask questions about your spatial transcriptomics data.

Examples: "Annotate cell types", "Find spatially variable genes", "Show BRCA1 expression"

Skills

Session Logs