LICENSE
README.md
pyproject.toml
lobster/agents/metadata_assistant/__init__.py
lobster/agents/metadata_assistant/config.py
lobster/agents/metadata_assistant/metadata_assistant.py
lobster/agents/metadata_assistant/prompts.py
lobster/agents/metadata_assistant/py.typed
lobster/agents/metadata_assistant/state.py
lobster/config/disease_ontology.json
lobster/services/metadata/clinical_metadata_service.py
lobster/services/metadata/disease_ontology_service.py
lobster/services/metadata/disease_standardization_service.py
lobster/services/metadata/metadata_filtering_service.py
lobster/services/metadata/metadata_standardization_service.py
lobster/services/metadata/microbiome_filtering_service.py
lobster/services/metadata/sample_grouping_service.py
lobster/services/metadata/sample_mapping_service.py
lobster/services/vector/__init__.py
lobster/services/vector/config.py
lobster/services/vector/ontology_graph.py
lobster/services/vector/service.py
lobster/services/vector/backends/__init__.py
lobster/services/vector/backends/base.py
lobster/services/vector/backends/chromadb_backend.py
lobster/services/vector/backends/faiss_backend.py
lobster/services/vector/backends/pgvector_backend.py
lobster/services/vector/embeddings/__init__.py
lobster/services/vector/embeddings/base.py
lobster/services/vector/embeddings/minilm.py
lobster/services/vector/embeddings/openai_embedder.py
lobster/services/vector/embeddings/sapbert.py
lobster/services/vector/rerankers/__init__.py
lobster/services/vector/rerankers/base.py
lobster/services/vector/rerankers/cohere_reranker.py
lobster/services/vector/rerankers/cross_encoder_reranker.py
lobster_metadata.egg-info/PKG-INFO
lobster_metadata.egg-info/SOURCES.txt
lobster_metadata.egg-info/dependency_links.txt
lobster_metadata.egg-info/entry_points.txt
lobster_metadata.egg-info/requires.txt
lobster_metadata.egg-info/top_level.txt