Rendering
of spots
Representative sampling is stratified across annotations.
Fully opaque: frontmost spots hide points behind them.
Full signal opacity at shared trait Q95:
.
Hiding spots below −log10(P)
in both comparison panels.
Preparing the interactive report
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Active analysis
Explore trait association, gene specificity, embeddings, and enrichment using one synchronized selection.
Trait
Sample
Annotation
Gene
Traits
Samples
Annotations
View
Trait and sample choices are independent of the sidebar. Different GWAS sample sizes can affect −log10(P); colors are not a statistical test of differences.
Annotation category and legend selection are shared with the other maps. No GWAS cutoff is applied.
Rendering
of spots
Representative sampling is annotation-aware.
Color scale is shared across samples: 0–.
Full signal opacity at shared trait Q95:
.
Spots below −log10(P)
are hidden in both comparison panels.
These static overview images show all categories; use the interactive point maps for category focus.
One trait across all samples
Shared trait scale across tissues; the strongest signal is retained when spots occupy the same raster pixel.
Open full imageLoading the all-sample image…
The all-sample image is unavailable for this trait.
One sample across all traits
Every trait uses its own color scale and color bar so spatial patterns remain legible.
Open full imageLoading the all-trait image…
The all-trait image is unavailable for this sample.
Full-analysis gene PCC and static expression/GSS plots — not recomputed for the selected categories.
Loading gene data...
Expression
Gene specificity score
Gene diagnostic table
Select a highlighted top gene to update the diagnostic plots.
Loading embedding data…
Trait
Annotation
plotted spots
Pan or zoom to inspect local embedding structure.
Cell embedding
Equal-axis geometry · strongest trait signals are drawn on top
−log10(P) ·
Annotation ·
Niche embedding
Neighborhood representation of the same plotted spots
−log10(P) ·
Annotation ·
GWAS-level signal and full-analysis gene highlights — not a category-specific GWAS.
Loading Manhattan data…
Loading enrichment data…
Filtered by sidebar annotation selection.
Enrichment heatmap
No matches.
No matches.
No matching results. Try another search or reset the filters.
Color limits stay fixed across pages and searches.
Click + in search results to keep a subset; × removes an item.
Gray = missing. Hover shows full names and original values.
Graph and neighborhood
- Graph mode
- External graph neighbors
- Spatial neighbors
- Homogeneous neighbors
- Cross-section selection
Browser visualization
- 2D display cap
- 3D display cap
- UMAP display cap
- 3D geometry
- Static overview matrices