.editorconfig
.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CHANGELOG.md
CONTRIBUTING.rst
LICENSE
README.md
pyproject.toml
.github/pull_request_template.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/enhancement_request.md
.github/workflows/ci.yml
.github/workflows/release.yml
docs/Makefile
docs/make.bat
docs/source/_key_contributors.rst
docs/source/about.rst
docs/source/api.rst
docs/source/conf.py
docs/source/getting_started.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/references.bib
docs/source/references.rst
docs/source/release_notes.rst
docs/source/_ext/edit_on_github.py
docs/source/_static/colab-badge.svg
docs/source/_static/custom.css
docs/source/_static/nbviewer-badge.svg
docs/source/_templates/autosummary/base.rst
docs/source/_templates/autosummary/class.rst
docs/source/perspectives/index.rst
docs/source/vignettes/index.rst
scvelo/__init__.py
scvelo/read_load.py
scvelo/settings.py
scvelo/utils.py
scvelo/core/__init__.py
scvelo/core/_anndata.py
scvelo/core/_arithmetic.py
scvelo/core/_base.py
scvelo/core/_linear_models.py
scvelo/core/_metrics.py
scvelo/core/_models.py
scvelo/core/_parallelize.py
scvelo/core/_utils.py
scvelo/datasets/__init__.py
scvelo/datasets/_biomart.py
scvelo/datasets/_datasets.py
scvelo/datasets/_load.py
scvelo/datasets/_read.py
scvelo/datasets/_simulate.py
scvelo/inference/__init__.py
scvelo/inference/_metabolic_labeling.py
scvelo/logging/__init__.py
scvelo/logging/_logging.py
scvelo/plotting/__init__.py
scvelo/plotting/docs.py
scvelo/plotting/gridspec.py
scvelo/plotting/heatmap.py
scvelo/plotting/paga.py
scvelo/plotting/palettes.py
scvelo/plotting/proportions.py
scvelo/plotting/pseudotime.py
scvelo/plotting/scatter.py
scvelo/plotting/simulation.py
scvelo/plotting/summary.py
scvelo/plotting/utils.py
scvelo/plotting/velocity.py
scvelo/plotting/velocity_embedding.py
scvelo/plotting/velocity_embedding_grid.py
scvelo/plotting/velocity_embedding_stream.py
scvelo/plotting/velocity_graph.py
scvelo/preprocessing/__init__.py
scvelo/preprocessing/moments.py
scvelo/preprocessing/neighbors.py
scvelo/preprocessing/utils.py
scvelo/tools/__init__.py
scvelo/tools/_core.py
scvelo/tools/_em_model.py
scvelo/tools/_em_model_core.py
scvelo/tools/_em_model_utils.py
scvelo/tools/_steady_state_model.py
scvelo/tools/optimization.py
scvelo/tools/paga.py
scvelo/tools/rank_velocity_genes.py
scvelo/tools/score_genes_cell_cycle.py
scvelo/tools/terminal_states.py
scvelo/tools/transition_matrix.py
scvelo/tools/utils.py
scvelo/tools/velocity.py
scvelo/tools/velocity_confidence.py
scvelo/tools/velocity_embedding.py
scvelo/tools/velocity_graph.py
scvelo/tools/velocity_pseudotime.py
scvelo_modern.egg-info/PKG-INFO
scvelo_modern.egg-info/SOURCES.txt
scvelo_modern.egg-info/dependency_links.txt
scvelo_modern.egg-info/requires.txt
scvelo_modern.egg-info/scm_file_list.json
scvelo_modern.egg-info/scm_version.json
scvelo_modern.egg-info/top_level.txt
tests/test_numpy_compatibility.py