fastapi>=0.100
uvicorn>=0.23
httpx<1,>=0.24
python-multipart
pyyaml
setproctitle

[all]
everyome[atac,hic,molbio,pipelines,rna,singlecell]

[atac]
everyome[singlecell]
snapatac2>=2.9
muon>=0.1.9

[browser]
everyome[dev]
playwright

[deconvolution]
everyome[singlecell]
cell2location==0.1.5

[dev]
everyome[atac,hic,molbio,rna,singlecell,test]

[hic]
numpy
h5py

[molbio]
primer3-py
biopython

[pipelines]
everyome-pipelines==0.1.0a7

[rna]
numpy
pandas<4
scipy
matplotlib
pydeseq2

[singlecell]
numpy
pandas<4
scipy
scanpy>=1.9
anndata>=0.9
harmonypy
leidenalg
igraph
openpyxl
seaborn
matplotlib
pyarrow

[singlecell:python_version < "3.11"]
pynndescent<0.7

[test]
pytest
