.gitignore
LICENSE
README.md
environment.yml
pyproject.toml
.github/workflows/ci.yml
src/scarap/README.md
src/scarap/__init__.py
src/scarap/__main__.py
src/scarap/callers.py
src/scarap/checkers.py
src/scarap/computers.py
src/scarap/helpers.py
src/scarap/module_wrappers.py
src/scarap/modules.py
src/scarap/pan.py
src/scarap/readerswriters.py
src/scarap/utils.py
src/scarap.egg-info/PKG-INFO
src/scarap.egg-info/SOURCES.txt
src/scarap.egg-info/dependency_links.txt
src/scarap.egg-info/entry_points.txt
src/scarap.egg-info/requires.txt
src/scarap.egg-info/top_level.txt
src/scarap/tests/test_check_mmseqs.py
src/scarap/tests/test_cn_rooting.py
src/scarap/tests/test_ficlin.py
src/scarap/tests/test_superfamily_splitting.py
src/scarap/tests/test_tree_rooting.py
test/01_pan.bats
test/02_pan_hierarchical.bats
test/03_build.bats
test/04_search.bats
test/05_check.bats
test/06_concatenate.bats
test/07_sample.bats
test/08_core.bats
test/README.md