DAY-EC activated.
DAY-EC activated.
Cloning into '/fsx/analysis_results/ubuntu/ccv20260529r2_simple-test_dryrun/daylily-omics-analysis'...
Note: switching to '3d5e86c38f1a03a2a47cbad570d4ace5386bbec6'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

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Cloning repository...

Great success! Daylily repository cloned.
Repository: https://github.com/Daylily-Informatics/daylily-omics-analysis.git
Reference : 2.0.23
Location  : /fsx/analysis_results/ubuntu/ccv20260529r2_simple-test_dryrun/daylily-omics-analysis

To get started:
  cd /fsx/analysis_results/ubuntu/ccv20260529r2_simple-test_dryrun/daylily-omics-analysis
  # initialize and run the analysis repository per its documentation
[INFO] Input staging skipped for this catalog command.
Unknown parameter passed: source dyoainit; dy-a local hg38; dy-r -p -k -j 1 help
This script initializes the Day CLI (commands aliased to dy-* ).
Region is autodetected as us-west-2
Usage: source bash [--project <project_name>] [--skip-project-check]
If --project is not specified, the default budget for the region is used: daylily-omics-analysis-us-west-2.
Valid projects/budgets and authorized users:
daylily-global	ubuntu,daylily
daylily-global	ubuntu,
da-us-west-2d-lsmc-oa-usw2d-n3	ubuntu,
da-us-west-2d-lsmc-omica-analysis-n4	ubuntu,
da-us-west-2d-lsmc-omics-analysis-usw2d	ubuntu,
da-us-west-2d-lsmc-oa-usw1d	ubuntu,
da-us-west-2d-lsmc-oa-jem-usw2d	ubuntu,
da-us-west-2d-lsmc-oa-jemx3-usw2d	ubuntu,
da-us-west-2d-lsmc-jem-test-usw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-jem-usw2dtest	ubuntu,ubuntu
da-us-west-2d-lsmc-jem-ussss	ubuntu,ubuntu
da-us-west-2d-lsmc-sffff	ubuntu,ubuntu
da-us-west-2d-lsmc-test-test	ubuntu,ubuntu
da-us-west-2d-lsmc-oa-test-usw2	ubuntu,ubuntu
da-us-west-2d-lsmc-jem-test	ubuntu,ubuntu
da-us-west-2d-lsmc-test-jem	ubuntu,ubuntu
da-us-west-2d-jemasda	ubuntu,ubuntu
da-us-west-2d-jemblah	ubuntu,ubuntu
da-us-west-2d-lsmc-usw2d-blah	ubuntu,ubuntu
da-us-west-2d-lsmc-jem-usw2dgo	ubuntu,ubuntu
da-us-west-2d-lsmc-oa-usw2dagain	ubuntu,ubuntu
da-us-west-2d-lsmc-usw2d-07189	ubuntu,ubuntu
da-us-west-2d-lsmc-giababilmn-uw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-sentest-usw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-senttests-usw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-hybrid-rerun-usw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-sent-reanalysis-uw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-parallel-2	ubuntu,ubuntu
da-us-west-2d-lsmc-bigger-fs	ubuntu,ubuntu
da-us-west-2d-lsmc-test-new-ilmn	ubuntu,ubuntu
da-us-west-2d-giab-sownsamp-test	ubuntu,ubuntu
da-us-west-2d-lsmc-retest-usw2d	ubuntu,ubuntu
da-us-west-2d-lsmc-ultima-finetune	ubuntu,ubuntu
da-us-west-2d-lsmc-ultima-gatk	ubuntu,ubuntu
da-us-west-2d-lsmc-regatk-usw2d	ubuntu,ubuntu
da-us-west-2d-dragen	ubuntu,ubuntu
da-us-west-2d-dgn2	ubuntu,ubuntu
da-us-west-2d-dgn3	ubuntu,ubuntu
da-us-west-2c-dragentest	ubuntu,ubuntu
da-us-west-2c-dragen-usw2c	ubuntu,ubuntu
da-us-west-2c-dragen-usw2cx2	ubuntu,ubuntu
da-us-west-2c-dgn-usw2c	ubuntu,ubuntu
da-us-west-2c-dgusw2c	ubuntu,ubuntu
da-us-west-2c-dgnusw2c	ubuntu,ubuntu
da-us-west-2c-dgn2c	ubuntu,ubuntu
da-us-west-2d-dragen-fixed	ubuntu,ubuntu
da-us-west-2d-lsmc-ug-newchemistry	ubuntu,ubuntu
da-us-west-2d-ultima-reruns	ubuntu,ubuntu
da-us-west-2d-lsmc-newdev	ubuntu,ubuntu
da-us-west-2d-jem-automate	ubuntu,ubuntu
da-us-west-2d-jem-test2	ubuntu,ubuntu
da-us-west-2d-jemblahhh	ubuntu,ubuntu
da-us-west-2d-jem-random	ubuntu,ubuntu
da-us-west-2d-jembbbb	ubuntu,ubuntu
da-us-west-2d-jemred	ubuntu,
da-us-west-2d-lsmc-day2test	ubuntu,
da-us-west-2d-jemlsmc	ubuntu,
da-us-west-2d-jem2	ubuntu,
da-us-west-2d-takethree	ubuntu,
da-us-west-2d-takefive	ubuntu,
da-us-west-2d-takesix	ubuntu,
da-us-west-2d-takeeight	ubuntu,
da-us-west-2d-takenine	ubuntu,
da-us-west-2d-taketen	ubuntu,
da-us-west-2d-takeeleven	ubuntu,
da-us-west-2d-taketwelve	ubuntu,
da-us-west-2d-take14	ubuntu,
da-us-west-2d-take15	ubuntu,
da-us-west-2d-take20	ubuntu,
da-us-west-2d-jem-delme	ubuntu,
da-us-west-2d-jem-delme	ubuntu,
da-us-west-2d-jem-again	ubuntu,
da-us-west-2d-jem-threee	ubuntu,
da-us-west-2d-jem-fourx	ubuntu,
da-us-west-2d-jem-andagain	ubuntu,
da-us-west-2d-jem-againx	ubuntu,
da-us-west-2d-jem-aaa	ubuntu,
da-us-west-2d-jem-okgo	ubuntu,
da-us-west-2d-bhfghdfgh	ubuntu,
da-us-west-2d-jkj	ubuntu,
da-us-west-2d-dfghfghfghfg	ubuntu,
da-us-west-2d-blahfdfg	ubuntu,
da-us-west-2d-yoyoaa	ubuntu,
da-us-west-2d-kkkl	ubuntu,
da-us-west-2d-majors-cluster	ubuntu,
da-us-west-2d-ghjghjghj	ubuntu,
da-us-west-2d-again	ubuntu,
da-us-west-2d-branchtest	ubuntu,
da-us-west-2d-jem-07348	ubuntu,
da-us-west-2d-againokx	ubuntu,
da-us-west-2d-jem-07355	ubuntu,
da-us-west-2d-dayoa-07357	ubuntu,
da-us-west-2d-dayoa-07357x	ubuntu,ubuntu
da-us-west-2d-xxaabb	ubuntu,
da-us-west-2d-xxaabb2	ubuntu,ubuntu
da-us-west-2d-dyoa-usw2d-07375	ubuntu,
da-us-west-2d-dyoa-bigboy	ubuntu,
da-us-west-2d-dyoa-smn12-go	ubuntu,
da-us-west-2d-giab-test	ubuntu,
da-us-west-2d-ifx-tests	ubuntu,
da-us-west-2d-lfg-usw2d	ubuntu,
da-us-west-2d-jem-split-test	ubuntu,
da-us-west-2d-jemtest2	ubuntu,
da-us-west-2d-jem-usw2-3	ubuntu,
da-us-west-2d-uswest2d-A	ubuntu,
da-us-west-2d-usw2d-B	ubuntu,
da-us-west-2d-cher-usw2	ubuntu,
da-us-west-2d-tearit-usw2	ubuntu,
da-us-west-2d-gogogo	ubuntu,
da-us-west-2d-josh-test-dev	ubuntu,
da-us-west-2d-agbt-usw2d-primary	ubuntu,
da-us-west-2d-agbt--wrkhrse-usw2	ubuntu,
da-us-west-2d-agbt--12-usw2d	ubuntu,
da-us-west-2d-agbt-12t-usw2d	ubuntu,
da-us-west-2d-day-test-uswest2d	ubuntu,daylily-service
da-us-west-2d-day-forge-usw2d	ubuntu,root
da-us-west-2d-agbt-heavy	ubuntu,
da-us-west-2d-daylily-1773059211	ubuntu,root
da-us-west-2d-ifx-go	ubuntu,daylily-service
da-us-west-2d-and-again	ubuntu,ubuntu
da-us-west-2d-jemx2	ubuntu,root
da-us-west-2d-y260609-frz	ubuntu
da-us-west-2d-lsbio-fork-260509-124701	ubuntu
da-us-west-2d-fk-260509-use	ubuntu
da-us-west-2d-pilot-mk	ubuntu
da-us-west-2d-pilot-largecluster	ubuntu
da-us-west-2d-may26-d	ubuntu
da-us-west-2d-dra-enabled	ubuntu
da-us-west-2d-XLpilot	ubuntu
da-us-west-2d-XL-pilot	ubuntu
da-us-west-2d-tstVer4-1-1	ubuntu
da-us-west-2d-fork-fixer	ubuntu
da-us-west-2d-tstClu-4-1-1c	ubuntu
da-us-west-2d-splitdra-ref-20260526	ubuntu
da-us-west-2d-jem-bucktst3	ubuntu
da-us-west-2d-blahab44	ubuntu
da-us-west-2d-goodole3	ubuntu
da-us-west-2d-dyec-test	ubuntu

Valid regions: Use a valid AWS region (e.g., us-east-1, us-west-2).
[INFO] Workflow exited with status 3
To run a command as administrator (user "root"), use "sudo <command>".
See "man sudo_root" for details.

DAY-EC activated.
(DAY-EC) ubuntu@ip-10-0-0-88:/fsx/analysis_results/ubuntu/ccv20260529r2_simple-test_dryrun/daylily-omics-analysis$
