command_id=8dbf44f6-a103-4580-8a4c-e3ed7226181e
DAY-EC activated.
DAY-EC activated.
__DATE__=2026-06-03T06:24:08+00:00 attempt=1
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconvert.L0
03.0002_tiles0132-0262.log /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_f
astqs/L003/0002_tiles0132-0262/Reports/fastq_list.csv /fsx/run_dir_mounts/202605
14_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_a
rgfix_20260603T0620Z/tile_fastqs/L003/0002_tiles0132-0262/Reports/Demultiplex_St
ats.csv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0002_ti
les0132-0262/bclconvert.done s_3_1234+s_3_1235+s_3_1236+s_3_1237+s_3_1238+s_3_12
39+s_3_1240+s_3_1241+s_3_1242+s_3_1243+s_3_1244+s_3_1245+s_3_1246+s_3_1247+s_3_1
248+s_3_1249+s_3_1250+s_3_1251+s_3_1252+s_3_1253+s_3_1254+s_3_1255+s_3_1256+s_3_
1257+s_3_1258+s_3_1259+s_3_1260+s_3_1261+s_3_1262+s_3_1263+s_3_1264+s_3_1265+s_3
_1266+s_3_1267+s_3_1268+s_3_1269+s_3_1270+s_3_1271+s_3_1272+s_3_1273+s_3_1274+s_
3_1275+s_3_1276+s_3_1277+s_3_1278+s_3_1279+s_3_1280+s_3_1281+s_3_1282+s_3_1283+s
_3_1284+s_3_1285+s_3_1286+s_3_1287+s_3_1288+s_3_1289+s_3_1290+s_3_1291+s_3_1292+
s_3_1293+s_3_1294+s_3_1295+s_3_1296+s_3_1297+s_3_1298+s_3_1301+s_3_1302+s_3_1303
+s_3_1304+s_3_1305+s_3_1306+s_3_1307+s_3_1308+s_3_1309+s_3_1310+s_3_1311+s_3_131
2+s_3_1313+s_3_1314+s_3_1315+s_3_1316+s_3_1317+s_3_1318+s_3_1319+s_3_1320+s_3_13
21+s_3_1322+s_3_1323+s_3_1324+s_3_1325+s_3_1326+s_3_1327+s_3_1328+s_3_1329+s_3_1
330+s_3_1331+s_3_1332+s_3_1333+s_3_1334+s_3_1335+s_3_1336+s_3_1337+s_3_1338+s_3_
1339+s_3_1340+s_3_1341+s_3_1342+s_3_1343+s_3_1344+s_3_1345+s_3_1346+s_3_1347+s_3
_1348+s_3_1349+s_3_1350+s_3_1351+s_3_1352+s_3_1353+s_3_1354+s_3_1355+s_3_1356+s_
3_1357+s_3_1358+s_3_1359+s_3_1360+s_3_1361+s_3_1362+s_3_1363+s_3_1364+s_3_1365+s
_3_1366 /dev/shm/dayoa_bclconvert 650000000000

[Wed Jun  3 06:23:55 2026]
rule merge_bclconvert_tile_shards:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0001
_tiles0001-0131/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TV
LGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/
tile_reports/L003/0002_tiles0132-0262/bclconvert.done, /fsx/run_dir_mounts/20260
514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_
argfix_20260603T0620Z/tile_reports/L003/0003_tiles0263-0393/bclconvert.done, /fs
x/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6sh
ard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0004_tiles0394-052
4/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fr
om_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L
003/0005_tiles0525-0654/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_00
09_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_2026060
3T0620Z/tile_reports/L003/0006_tiles0655-0784/bclconvert.done, /fsx/run_dir_moun
ts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem
_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0001_tiles0001-0131/Reports/fastq
_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0002_
tiles0132-0262/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009
_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T
0620Z/tile_fastqs/L003/0003_tiles0263-0393/Reports/fastq_list.csv, /fsx/run_dir_
mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bi
gmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0004_tiles0394-0524/Reports/f
astq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0
005_tiles0525-0654/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_
0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260
603T0620Z/tile_fastqs/L003/0006_tiles0655-0784/Reports/fastq_list.csv, /fsx/run_
dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i1
92bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0001_tiles0001-0131/Repor
ts/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/f
asts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fa
stqs/L003/0002_tiles0132-0262/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts
/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_d
evshm_argfix_20260603T0620Z/tile_fastqs/L003/0003_tiles0263-0393/Reports/Demulti
plex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_
bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/
0004_tiles0394-0524/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_
LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argf
ix_20260603T0620Z/tile_fastqs/L003/0005_tiles0525-0654/Reports/Demultiplex_Stats
.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert
_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0006_tiles
0655-0784/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_00
09_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_2026060
3T0620Z/normalized.SampleSheet.csv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_reports/L003/bcl
convert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bc
lconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Re
ports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts
_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_fastqs
/L003/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B
23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T06
20Z/lane_reports/L003/SampleSheet.csv
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/merge_bclconvert_ti
le_shards.L003.log
    jobid: 3
    benchmark: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/benchmarks/merge_b
clconvert_tile_shards.L003.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z
/lane_reports/L003/SampleSheet.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B2
3TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T062
0Z/lane_fastqs/L003/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106
_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_2026
0603T0620Z/lane_reports/L003/bclconvert.done, /fsx/run_dir_mounts/20260514_LH011
06_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20
260603T0620Z/lane_fastqs/L003/Reports/Demultiplex_Stats.csv; Input files updated
 by another job: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from
_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003
/0001_tiles0001-0131/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514
_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_arg
fix_20260603T0620Z/tile_fastqs/L003/0003_tiles0263-0393/Reports/Demultiplex_Stat
s.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconver
t_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0004_tile
s0394-0524/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23
TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620
Z/tile_fastqs/L003/0002_tiles0132-0262/Reports/fastq_list.csv, /fsx/run_dir_moun
ts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem
_devshm_argfix_20260603T0620Z/tile_reports/L003/0006_tiles0655-0784/bclconvert.d
one, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_
l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0003_tiles
0263-0393/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_f
astqs/L003/0001_tiles0001-0131/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260
514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_
argfix_20260603T0620Z/tile_fastqs/L003/0005_tiles0525-0654/Reports/fastq_list.cs
v, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l0
03_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0003_tiles026
3-0393/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLG
LT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/ti
le_reports/L003/0001_tiles0001-0131/bclconvert.done, /fsx/run_dir_mounts/2026051
4_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_ar
gfix_20260603T0620Z/tile_fastqs/L003/0004_tiles0394-0524/Reports/Demultiplex_Sta
ts.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0006_til
es0655-0784/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B2
3TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T062
0Z/tile_fastqs/L003/0006_tiles0655-0784/Reports/Demultiplex_Stats.csv, /fsx/run_
dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i1
92bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0002_tiles0132-0262/bclc
onvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bcl
convert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/000
5_tiles0525-0654/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH0
1106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_
20260603T0620Z/tile_fastqs/L003/0002_tiles0132-0262/Reports/Demultiplex_Stats.cs
v, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l0
03_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0005_tiles05
25-0654/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fa
sts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_rep
orts/L003/0004_tiles0394-0524/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01
106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_2
0260603T0620Z/normalized.SampleSheet.csv
    wildcards: lane=L003
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=<TB
D>, threads=1, time=5440, partition=i192bigmem, vcpu=1, distribution=block, excl
usive=, constraint=, exclude=, include=

python workflow/scripts/merge_bclconvert_tile_shards.py --tile-fastq-root /fsx/r
un_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard
_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs --lane-output-dir /fsx/run_
dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i1
92bigmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003 --report-dir /fsx/run_dir
_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192b
igmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Reports --lane L003 --shards
 0001_tiles0001-0131,0002_tiles0132-0262,0003_tiles0263-0393,0004_tiles0394-0524
,0005_tiles0525-0654,0006_tiles0655-0784 --merge-fastqs false --sample-sheet /fs
x/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6sh
ard_i192bigmem_devshm_argfix_20260603T0620Z/normalized.SampleSheet.csv --lane-sa
mple-sheet /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_reports/L003/Samp
leSheet.csv --done /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fr
om_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_reports/L
003/bclconvert.done --log /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/f
asts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/me
rge_bclconvert_tile_shards.L003.log >> /fsx/run_dir_mounts/20260514_LH01106_0009
_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T
0620Z/logs/merge_bclconvert_tile_shards.L003.log 2>&1 && test -s /fsx/run_dir_mo
unts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigm
em_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Reports/fastq_list.csv && test
-s /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l0
03_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Reports/Demul
tiplex_Stats.csv

[Wed Jun  3 06:23:55 2026]
localrule run_bclconvert:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/validated.ok, /fs
x/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6sh
ard_i192bigmem_devshm_argfix_20260603T0620Z/normalized.SampleSheet.csv, /fsx/run
_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i
192bigmem_devshm_argfix_20260603T0620Z/lane_reports/L003/bclconvert.done, /fsx/r
un_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard
_i192bigmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Reports/fastq_list.csv
, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l00
3_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Reports/Demult
iplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from
_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_reports/L00
3/SampleSheet.csv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/bclconvert.done
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconvert.lane
_fastqs_ready.log
    jobid: 2
    benchmark: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/benchmarks/run_bcl
convert.lane_fastqs_ready.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z
/logs/bclconvert.done; Input files updated by another job: /fsx/run_dir_mounts/2
0260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_dev
shm_argfix_20260603T0620Z/lane_fastqs/L003/Reports/fastq_list.csv, /fsx/run_dir_
mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bi
gmem_devshm_argfix_20260603T0620Z/lane_reports/L003/bclconvert.done, /fsx/run_di
r_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192
bigmem_devshm_argfix_20260603T0620Z/lane_fastqs/L003/Reports/Demultiplex_Stats.c
sv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l
003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_reports/L003/SampleSheet
.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert
_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/validated.ok, /fsx/run
_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i
192bigmem_devshm_argfix_20260603T0620Z/normalized.SampleSheet.csv
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/de
v/shm/dayoa_bclconvert_tmp, threads=1, time=5440, partition=i192bigmem, vcpu=1,
distribution=block, exclusive=, constraint=, exclude=, include=


            set -euo pipefail
            mkdir -p /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_
from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs
            : > /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_
bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconve
rt.lane_fastqs_ready.log
            printf 'merge_lane_fastqs=false; lane FASTQs remain under %s for lan
es %s\n' \
              /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bc
lconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/lane_fastqs L003 >>
 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003
_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconvert.lane_fastqs_
ready.log
            touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fro
m_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/bclconvert
.done


[Wed Jun  3 06:23:55 2026]
localrule produce_bclconvert_fastqs:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/validated.ok, /fs
x/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6sh
ard_i192bigmem_devshm_argfix_20260603T0620Z/logs/bclconvert.done
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/fastqs.complete
    log: results/day/hg38/logs/produce_bclconvert_fastqs.log
    jobid: 0
    benchmark: results/day/hg38/benchmarks/produce_bclconvert_fastqs.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z
/fastqs.complete, results/day/hg38/benchmarks/produce_bclconvert_fastqs.bench.ts
v; Input files updated by another job: /fsx/run_dir_mounts/20260514_LH01106_0009
_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T
0620Z/logs/validated.ok, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fa
sts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/bcl
convert.done
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/de
v/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=b
lock, exclusive=, constraint=, exclude=, include=

touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert
_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/fastqs.complete
Job stats:
job                             count    min threads    max threads
----------------------------  -------  -------------  -------------
bclconvert_validate_inputs          1              1              1
merge_bclconvert_tile_shards        1              1              1
produce_bclconvert_fastqs           1              1              1
run_bclconvert                      1              1              1
run_bclconvert_tile_shard           6            192            192
total                              10              1            192

Reasons:
    (check individual jobs above for details)
    input files updated by another job:
        merge_bclconvert_tile_shards, produce_bclconvert_fastqs, run_bclconvert,
 run_bclconvert_tile_shard
    missing output files:
        bclconvert_validate_inputs, merge_bclconvert_tile_shards, produce_bclcon
vert_fastqs, run_bclconvert, run_bclconvert_tile_shard

This was a dry-run (flag -n). The order of jobs does not reflect the order of ex
ecution.
RETURN CODE: 0
__DRYRUN_ARGFIX_EXIT__=0
[Dslu](DAYOA)

