cffi>=1.15.0
xarray>=2024.0.0
scikit-image>=0.25
matplotlib>=3.8.0
tqdm>=4.64.0
scikit-learn>=1.4.2
zarr
numpy>=1.23
opencv-python>=4.11.0
pyyaml>=6.0

[all]
spatialdata
cellpose
stardist
astir

[anndata]
anndata

[astir]
astir>=0.1.5

[cellpose]
cellpose>=3.1.0

[dev]
pytest>=7.1.2
pytest-cov>=3.0.0
black[jupyter]>=22.6.0
isort>=5.10.1
flake8>=5.0.4
bandit>=1.7.4
safety>=2.1.1

[docs]
Sphinx>=7.0.0
sphinx-book-theme>=0.0.39
sphinxcontrib-napoleon==0.7
nbsphinx>=0.9
sphinx-multiversion>=0.2.4
IPython>=8.0.0

[spatialdata]
spatialdata>=0.4.0

[stardist]
stardist>=0.9.1
