biopython<1.89,>=1.85
numpy>=1.26
scipy>=1.11.2
pandas>=2.1.1
scikit-learn>=1.3.1
numba>=0.59
h5py>=3.10
pyhmmer<0.13,>=0.12.0
pyinfernal<0.2,>=0.1.0
pyrodigal>=3.0.1
jsonargparse>=4.49
shtab>=1.7
psutil>=5.9.6
tqdm>=4.65
requests>=2.31
urllib3>=2.0

[browser]
pytest-playwright>=0.4.0

[dev]
domainator[browser,docs,projection,test]
coverage

[docs]
mkdocs<2,>=1.6
mkdocs-material>=9.5
mkdocstrings[python]>=0.26

[projection]
umap-learn>=0.5.4

[structure]
torch>=2.0
fair-esm>=2.0

[test]
pytest>=7.4
pytest-datadir>=1.4.1
