LICENSE
README.md
pyproject.toml
src/pyadmd/__init__.py
src/pyadmd/__main__.py
src/pyadmd/console.py
src/pyadmd/constants.py
src/pyadmd/geometry.py
src/pyadmd/utils.py
src/pyadmd.egg-info/PKG-INFO
src/pyadmd.egg-info/SOURCES.txt
src/pyadmd.egg-info/dependency_links.txt
src/pyadmd.egg-info/entry_points.txt
src/pyadmd.egg-info/requires.txt
src/pyadmd.egg-info/top_level.txt
src/pyadmd/analysis/__init__.py
src/pyadmd/analysis/analyzer.py
src/pyadmd/analysis/completion.py
src/pyadmd/charmm/charmm_toppar.zip
src/pyadmd/charmm/wrt-nm.mdu
src/pyadmd/cli/__init__.py
src/pyadmd/cli/commands.py
src/pyadmd/cli/main.py
src/pyadmd/cli/parser.py
src/pyadmd/enm/__init__.py
src/pyadmd/enm/calculator.py
src/pyadmd/freeenergy/__init__.py
src/pyadmd/freeenergy/calculator.py
src/pyadmd/freeenergy/completion.py
src/pyadmd/io/__init__.py
src/pyadmd/io/dcd.py
src/pyadmd/io/namd.py
src/pyadmd/io/openmm_restart.py
src/pyadmd/io/params.py
src/pyadmd/io/state.py
src/pyadmd/modes/__init__.py
src/pyadmd/modes/exciter.py
src/pyadmd/simulation/__init__.py
src/pyadmd/simulation/engine.py
src/pyadmd/simulation/runner.py
src/pyadmd/simulation/system_builder.py